Gene: Nherf2 ENSMUSG00000002504

Description

NHERF family PDZ scaffold protein 2 [Source:MGI Symbol;Acc:MGI:1890662]

Gene Synonyms

0610011L07Rik, 1200011K07Rik, 2010007A20Rik, E3karp, Nherf2, Octs2, Sip-1, Sip1, Slc9a3r2, Sryip1, Tka-1

Location

Chromosome 17: 24,858,260-24,869,301 reverse strand.

GRCm39:CM001010.3

About this gene

This gene has 7 transcripts (splice variants), 269 orthologues, 3 paralogues and is associated with 10 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000002572.6	Nherf2-201	2136	337aa	ENSMUSP00000002572.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS28488	A0A0R4IZX2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000234557.2	Nherf2-205	2035	316aa	ENSMUSP00000157103.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q6NS54	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000234121.2	Nherf2-203	1840	231aa	ENSMUSP00000157037.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A3Q4EBU8	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000019684.13	Nherf2-202	1717	226aa	ENSMUSP00000019684.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS28489	A0A0R4J006	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000234505.2	Nherf2-204	1137	205aa	ENSMUSP00000157065.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A3Q4EHM9	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000234912.2	Nherf2-206	1420	No protein	-	Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined		-	-
ENSMUST00000235042.2	Nherf2-207	874	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-

Strains

More views of comparative genomics data, such as multiple alignments and synteny, are available on the Location page for this gene.

Gene: Nherf2 ENSMUSG00000002504

Strains

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Gene: Nherf2 ENSMUSG00000002504

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