Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
- Gene tree
- Gene gain/loss tree
- Orthologues
- Paralogues
- Strains
  - Gene tree
  - Orthologues
  - Paralogues
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: ENSMUSG00000143492

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Description

novel transcript

Location

Chromosome 18: 28,170,393-28,295,005 reverse strand.

GRCm39:CM001011.3

About this gene

This gene has 19 transcripts (splice variants).

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	Flags
ENSMUST00000377249.1	-	602	No protein	-	lncRNA		A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary,
ENSMUST00000377251.1	-	1025	No protein	-	lncRNA		A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000377250.1	-	931	No protein	-	lncRNA		-
ENSMUST00000377262.1	-	929	No protein	-	lncRNA		A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000377256.1	-	845	No protein	-	lncRNA		A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000377255.1	-	787	No protein	-	lncRNA		-
ENSMUST00000377260.1	-	786	No protein	-	lncRNA		-
ENSMUST00000377254.1	-	706	No protein	-	lncRNA		-
ENSMUST00000377267.1	-	700	No protein	-	lncRNA		-
ENSMUST00000377252.1	-	699	No protein	-	lncRNA		-
ENSMUST00000377257.1	-	698	No protein	-	lncRNA		-
ENSMUST00000377263.1	-	697	No protein	-	lncRNA		A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000377253.1	-	686	No protein	-	lncRNA		-
ENSMUST00000377265.1	-	677	No protein	-	lncRNA		-
ENSMUST00000377259.1	-	676	No protein	-	lncRNA		-
ENSMUST00000377261.1	-	676	No protein	-	lncRNA		-
ENSMUST00000377264.1	-	644	No protein	-	lncRNA		-
ENSMUST00000377266.1	-	631	No protein	-	lncRNA		-
ENSMUST00000377258.1	-	588	No protein	-	lncRNA		-

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Strains

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Genomic alignments

Gene tree (Not available)

Orthologues (Not available)

Paralogues (Not available)

Families (Not available)

More views of comparative genomics data, such as multiple alignments and synteny, are available on the Location page for this gene.

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Personal Data