Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
- Gene tree
- Gene gain/loss tree
- Orthologues
- Paralogues
- Strains
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  - Orthologues
  - Paralogues
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: 1700048O14Rik ENSMUSG00000118016

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Description

RIKEN cDNA 1700048O14 gene [Source:MGI Symbol;Acc:MGI:1920683]

Location

Chromosome 19: 26,008,058-26,024,071 reverse strand.

GRCm39:CM001012.3

About this gene

This gene has 16 transcripts (splice variants).

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	Flags
ENSMUST00000345049.1	1700048O14Rik-202	560	No protein	-	lncRNA		A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary,
ENSMUST00000237184.3	1700048O14Rik-201	1047	No protein	-	lncRNA		A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000345052.1	1700048O14Rik-205	918	No protein	-	lncRNA		A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000345051.1	1700048O14Rik-204	855	No protein	-	lncRNA		-
ENSMUST00000345062.1	1700048O14Rik-215	804	No protein	-	lncRNA		A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000345061.1	1700048O14Rik-214	785	No protein	-	lncRNA		-
ENSMUST00000345055.1	1700048O14Rik-208	782	No protein	-	lncRNA		-
ENSMUST00000345056.1	1700048O14Rik-209	782	No protein	-	lncRNA		-
ENSMUST00000345060.1	1700048O14Rik-213	712	No protein	-	lncRNA		-
ENSMUST00000345057.1	1700048O14Rik-210	690	No protein	-	lncRNA		A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000345054.1	1700048O14Rik-207	622	No protein	-	lncRNA		-
ENSMUST00000345050.1	1700048O14Rik-203	606	No protein	-	lncRNA		-
ENSMUST00000345063.1	1700048O14Rik-216	599	No protein	-	lncRNA		-
ENSMUST00000345053.1	1700048O14Rik-206	598	No protein	-	lncRNA		-
ENSMUST00000345058.1	1700048O14Rik-211	537	No protein	-	lncRNA		-
ENSMUST00000345059.1	1700048O14Rik-212	450	No protein	-	lncRNA		-

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Strains

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Genomic alignments

Gene tree (Not available)

Orthologues (Not available)

Paralogues (Not available)

Families (Not available)

More views of comparative genomics data, such as multiple alignments and synteny, are available on the Location page for this gene.

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Personal Data