Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
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- Gene gain/loss tree
- Orthologues
- Paralogues
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Ontologies
- GO: Anatomical entity
Phenotypes
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ID History
- Gene history

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Gene: Gm40658 ENSMUSG00000113717

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Description

predicted gene, 40658 [Source:MGI Symbol;Acc:MGI:5623543]

Location

Chromosome 13: 4,693,906-4,799,072 forward strand.

GRCm39:CM001006.3

About this gene

This gene has 16 transcripts (splice variants).

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	Flags
ENSMUST00000221900.2	Gm40658-202	701	No protein	-	lncRNA		A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENSMUST00000222210.2	Gm40658-203	1070	No protein	-	lncRNA		A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENSMUST00000361644.1	Gm40658-209	982	No protein	-	lncRNA		A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000361649.1	Gm40658-214	930	No protein	-	lncRNA		-
ENSMUST00000361642.1	Gm40658-207	907	No protein	-	lncRNA		A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000220455.2	Gm40658-201	906	No protein	-	lncRNA		TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENSMUST00000361639.1	Gm40658-204	888	No protein	-	lncRNA		-
ENSMUST00000361650.1	Gm40658-215	787	No protein	-	lncRNA		-
ENSMUST00000361643.1	Gm40658-208	766	No protein	-	lncRNA		-
ENSMUST00000361641.1	Gm40658-206	743	No protein	-	lncRNA		-
ENSMUST00000361640.1	Gm40658-205	716	No protein	-	lncRNA		-
ENSMUST00000361647.1	Gm40658-212	710	No protein	-	lncRNA		-
ENSMUST00000361646.1	Gm40658-211	690	No protein	-	lncRNA		-
ENSMUST00000361648.1	Gm40658-213	680	No protein	-	lncRNA		-
ENSMUST00000361651.1	Gm40658-216	665	No protein	-	lncRNA		-
ENSMUST00000361645.1	Gm40658-210	587	No protein	-	lncRNA		-

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Strains

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Genomic alignments

Gene tree (Not available)

Orthologues (Not available)

Paralogues (Not available)

Families (Not available)

More views of comparative genomics data, such as multiple alignments and synteny, are available on the Location page for this gene.

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Personal Data