Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
- Gene tree
- Gene gain/loss tree
- Orthologues
- Paralogues
- Strains
  - Gene tree
  - Orthologues
  - Paralogues
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

Configure this page

Export data

Share this page

Bookmark this page

.

Gene: Gm40987 ENSMUSG00000113559

.

Description

predicted gene, 40987 [Source:MGI Symbol;Acc:MGI:5623872]

Location

Chromosome 13: 66,117,516-66,256,522 reverse strand.

GRCm39:CM001006.3

About this gene

This gene has 17 transcripts (splice variants).

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	Flags
ENSMUST00000318157.1	Gm40987-206	695	No protein	-	lncRNA		A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary,
ENSMUST00000221856.2	Gm40987-202	1588	No protein	-	lncRNA		A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENSMUST00000243548.1	Gm40987-204	1575	No protein	-	lncRNA		-
ENSMUST00000245266.1	Gm40987-205	1144	No protein	-	lncRNA		-
ENSMUST00000220526.2	Gm40987-201	1005	No protein	-	lncRNA		TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENSMUST00000318160.1	Gm40987-209	959	No protein	-	lncRNA		A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000318162.1	Gm40987-211	936	No protein	-	lncRNA		-
ENSMUST00000318163.1	Gm40987-212	921	No protein	-	lncRNA		-
ENSMUST00000318165.1	Gm40987-214	823	No protein	-	lncRNA		-
ENSMUST00000318166.1	Gm40987-215	766	No protein	-	lncRNA		-
ENSMUST00000318159.1	Gm40987-208	752	No protein	-	lncRNA		-
ENSMUST00000223348.2	Gm40987-203	682	No protein	-	lncRNA		TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENSMUST00000318161.1	Gm40987-210	596	No protein	-	lncRNA		-
ENSMUST00000318167.1	Gm40987-216	472	No protein	-	lncRNA		-
ENSMUST00000318168.1	Gm40987-217	410	No protein	-	lncRNA		-
ENSMUST00000318158.1	Gm40987-207	408	No protein	-	lncRNA		-
ENSMUST00000318164.1	Gm40987-213	340	No protein	-	lncRNA		-

.

Strains

.

Genomic alignments

Gene tree (Not available)

Orthologues (Not available)

Paralogues (Not available)

Families (Not available)

More views of comparative genomics data, such as multiple alignments and synteny, are available on the Location page for this gene.

.

Personal Data