Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
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Comparative Genomics
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- Orthologues
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Ontologies
- GO: Anatomical entity
Phenotypes
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ID History
- Gene history

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Gene: Gm48427 ENSMUSG00000112234

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Description

predicted gene, 48427 [Source:MGI Symbol;Acc:MGI:6097926]

Location

Chromosome 10: 96,141,298-96,198,395 forward strand.

GRCm39:CM001003.3

About this gene

This gene has 18 transcripts (splice variants).

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	Flags
ENSMUST00000275758.1	Gm48427-203	929	No protein	-	lncRNA		A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary,
ENSMUST00000220354.3	Gm48427-202	1701	No protein	-	lncRNA		A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENSMUST00000275770.1	Gm48427-215	1623	No protein	-	lncRNA		A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000275771.1	Gm48427-216	1607	No protein	-	lncRNA		-
ENSMUST00000276213.1	Gm48427-217	1216	No protein	-	lncRNA		A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000275768.1	Gm48427-213	935	No protein	-	lncRNA		-
ENSMUST00000276214.1	Gm48427-218	865	No protein	-	lncRNA		-
ENSMUST00000275759.1	Gm48427-204	830	No protein	-	lncRNA		-
ENSMUST00000275766.1	Gm48427-211	807	No protein	-	lncRNA		-
ENSMUST00000275761.1	Gm48427-206	774	No protein	-	lncRNA		-
ENSMUST00000275764.1	Gm48427-209	767	No protein	-	lncRNA		-
ENSMUST00000275762.1	Gm48427-207	758	No protein	-	lncRNA		A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000218518.3	Gm48427-201	738	No protein	-	lncRNA		TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENSMUST00000275767.1	Gm48427-212	738	No protein	-	lncRNA		-
ENSMUST00000275760.1	Gm48427-205	701	No protein	-	lncRNA		-
ENSMUST00000275769.1	Gm48427-214	662	No protein	-	lncRNA		-
ENSMUST00000275765.1	Gm48427-210	643	No protein	-	lncRNA		-
ENSMUST00000275763.1	Gm48427-208	617	No protein	-	lncRNA		-

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Strains

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Genomic alignments

Gene tree (Not available)

Orthologues (Not available)

Paralogues (Not available)

Families (Not available)

More views of comparative genomics data, such as multiple alignments and synteny, are available on the Location page for this gene.

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Personal Data