Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
- Gene tree
- Gene gain/loss tree
- Orthologues
- Paralogues
- Strains
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  - Orthologues
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Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
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Molecular interactions
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ID History
- Gene history

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Gene: C230072F16Rik ENSMUSG00000112121

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Description

RIKEN cDNA C230072F16 gene [Source:MGI Symbol;Acc:MGI:2444727]

Location

Chromosome 17: 81,204,206-81,240,539 forward strand.

GRCm39:CM001010.3

About this gene

This gene has 15 transcripts (splice variants).

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	Flags
ENSMUST00000366992.1	C230072F16Rik-205	723	No protein	-	lncRNA		A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary,
ENSMUST00000366998.1	C230072F16Rik-208	1270	No protein	-	lncRNA		-
ENSMUST00000219184.2	C230072F16Rik-201	1253	No protein	-	lncRNA		A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000367005.1	C230072F16Rik-215	1245	No protein	-	lncRNA		-
ENSMUST00000367003.1	C230072F16Rik-213	1227	No protein	-	lncRNA		-
ENSMUST00000246143.2	C230072F16Rik-204	1194	No protein	-	lncRNA		-
ENSMUST00000220322.3	C230072F16Rik-203	1178	No protein	-	lncRNA		TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000220067.4	C230072F16Rik-202	1101	No protein	-	lncRNA		TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENSMUST00000366997.1	C230072F16Rik-207	1101	No protein	-	lncRNA		A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000366995.1	C230072F16Rik-206	1007	No protein	-	lncRNA		-
ENSMUST00000367002.1	C230072F16Rik-212	911	No protein	-	lncRNA		-
ENSMUST00000367001.1	C230072F16Rik-211	865	No protein	-	lncRNA		-
ENSMUST00000367000.1	C230072F16Rik-210	862	No protein	-	lncRNA		-
ENSMUST00000367004.1	C230072F16Rik-214	833	No protein	-	lncRNA		-
ENSMUST00000366999.1	C230072F16Rik-209	282	No protein	-	lncRNA		-

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Strains

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Genomic alignments

Gene tree (Not available)

Orthologues (Not available)

Paralogues (Not available)

Families (Not available)

More views of comparative genomics data, such as multiple alignments and synteny, are available on the Location page for this gene.

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Personal Data