Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
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- Gene gain/loss tree
- Orthologues
- Paralogues
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Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
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Molecular interactions
Regulation
External references
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ID History
- Gene history

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Gene: Gm48393 ENSMUSG00000110901

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Description

predicted gene, 48393 [Source:MGI Symbol;Acc:MGI:6097876]

Location

Chromosome 9: 26,631,128-26,645,974 reverse strand.

GRCm39:CM001002.3

About this gene

This gene has 15 transcripts (splice variants).

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	Flags
ENSMUST00000271315.1	Gm48393-203	736	No protein	-	lncRNA		A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary,
ENSMUST00000271321.1	Gm48393-209	862	No protein	-	lncRNA		A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000271322.1	Gm48393-210	809	No protein	-	lncRNA		A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000271316.1	Gm48393-204	807	No protein	-	lncRNA		-
ENSMUST00000271323.1	Gm48393-211	781	No protein	-	lncRNA		-
ENSMUST00000213570.2	Gm48393-201	767	No protein	-	lncRNA		A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENSMUST00000271317.1	Gm48393-205	748	No protein	-	lncRNA		-
ENSMUST00000271319.1	Gm48393-207	668	No protein	-	lncRNA		-
ENSMUST00000216969.2	Gm48393-202	666	No protein	-	lncRNA		TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENSMUST00000271324.1	Gm48393-212	641	No protein	-	lncRNA		-
ENSMUST00000271318.1	Gm48393-206	618	No protein	-	lncRNA		-
ENSMUST00000271320.1	Gm48393-208	588	No protein	-	lncRNA		-
ENSMUST00000271326.1	Gm48393-214	474	No protein	-	lncRNA		-
ENSMUST00000271325.1	Gm48393-213	471	No protein	-	lncRNA		-
ENSMUST00000271327.1	Gm48393-215	409	No protein	-	lncRNA		-

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Strains

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Genomic alignments

Gene tree (Not available)

Orthologues (Not available)

Paralogues (Not available)

Families (Not available)

More views of comparative genomics data, such as multiple alignments and synteny, are available on the Location page for this gene.

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Personal Data