Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
- Gene tree
- Gene gain/loss tree
- Orthologues
- Paralogues
- Strains
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  - Paralogues
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
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Pathway
Molecular interactions
Regulation
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ID History
- Gene history

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Gene: 9530062K07Rik ENSMUSG00000108030

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Description

RIKEN cDNA 9530062K07 gene [Source:MGI Symbol;Acc:MGI:1925989]

Location

Chromosome 6: 116,172,324-116,184,993 reverse strand.

GRCm39:CM000999.3

About this gene

This gene has 18 transcripts (splice variants).

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	Flags
ENSMUST00000306151.1	9530062K07Rik-202	583	No protein	-	lncRNA		A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary,
ENSMUST00000306165.1	9530062K07Rik-216	899	No protein	-	lncRNA		A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000306162.1	9530062K07Rik-213	893	No protein	-	lncRNA		-
ENSMUST00000306157.1	9530062K07Rik-208	804	No protein	-	lncRNA		A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000203332.3	9530062K07Rik-201	788	No protein	-	lncRNA		TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000306164.1	9530062K07Rik-215	766	No protein	-	lncRNA		-
ENSMUST00000306163.1	9530062K07Rik-214	752	No protein	-	lncRNA		A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000306161.1	9530062K07Rik-212	734	No protein	-	lncRNA		-
ENSMUST00000306152.1	9530062K07Rik-203	730	No protein	-	lncRNA		-
ENSMUST00000306155.1	9530062K07Rik-206	716	No protein	-	lncRNA		-
ENSMUST00000306158.1	9530062K07Rik-209	698	No protein	-	lncRNA		-
ENSMUST00000306166.1	9530062K07Rik-217	689	No protein	-	lncRNA		-
ENSMUST00000306153.1	9530062K07Rik-204	668	No protein	-	lncRNA		-
ENSMUST00000306156.1	9530062K07Rik-207	667	No protein	-	lncRNA		-
ENSMUST00000306154.1	9530062K07Rik-205	635	No protein	-	lncRNA		-
ENSMUST00000306160.1	9530062K07Rik-211	632	No protein	-	lncRNA		-
ENSMUST00000306167.1	9530062K07Rik-218	616	No protein	-	lncRNA		-
ENSMUST00000306159.1	9530062K07Rik-210	552	No protein	-	lncRNA		-

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Strains

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Genomic alignments

Gene tree (Not available)

Orthologues (Not available)

Paralogues (Not available)

Families (Not available)

More views of comparative genomics data, such as multiple alignments and synteny, are available on the Location page for this gene.

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Personal Data