Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
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Ontologies
- GO: Anatomical entity
Phenotypes
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Molecular interactions
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ID History
- Gene history

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Gene: 4930587E11Rik ENSMUSG00000107563

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Description

RIKEN cDNA 4930587E11 gene [Source:MGI Symbol;Acc:MGI:1923143]

Gene Synonyms

Gm44188

Location

Chromosome 6: 102,243,050-102,313,638 forward strand.

GRCm39:CM000999.3

About this gene

This gene has 11 transcripts (splice variants).

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	Flags
ENSMUST00000296906.1	4930587E11Rik-203	806	No protein	-	lncRNA		A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000204857.2	4930587E11Rik-202	807	No protein	-	lncRNA		A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000296907.1	4930587E11Rik-204	626	No protein	-	lncRNA		A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000296910.1	4930587E11Rik-207	517	No protein	-	lncRNA		A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000296909.1	4930587E11Rik-206	502	No protein	-	lncRNA		-
ENSMUST00000296908.1	4930587E11Rik-205	456	No protein	-	lncRNA		-
ENSMUST00000296912.1	4930587E11Rik-209	439	No protein	-	lncRNA		-
ENSMUST00000296913.1	4930587E11Rik-210	403	No protein	-	lncRNA		-
ENSMUST00000296911.1	4930587E11Rik-208	383	No protein	-	lncRNA		-
ENSMUST00000203050.3	4930587E11Rik-201	382	No protein	-	lncRNA		TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENSMUST00000296914.1	4930587E11Rik-211	280	No protein	-	lncRNA		-

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Strains

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Genomic alignments

Gene tree (Not available)

Orthologues (Not available)

Paralogues (Not available)

Families (Not available)

More views of comparative genomics data, such as multiple alignments and synteny, are available on the Location page for this gene.

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Personal Data