Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
- Gene tree
- Gene gain/loss tree
- Orthologues
- Paralogues
- Strains
  - Gene tree
  - Orthologues
  - Paralogues
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

Configure this page

Export data

Share this page

Bookmark this page

.

Gene: C78283 ENSMUSG00000106968

.

Description

expressed sequence C78283 [Source:MGI Symbol;Acc:MGI:2141303]

Location

Chromosome 5: 74,102,628-74,106,682 forward strand.

GRCm39:CM000998.3

About this gene

This gene has 13 transcripts (splice variants) and 2 orthologues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	Flags
ENSMUST00000202711.4	C78283-201	1869	No protein	-	lncRNA		A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000245964.2	C78283-202	2893	No protein	-	lncRNA		-
ENSMUST00000377864.1	C78283-207	2110	No protein	-	lncRNA		-
ENSMUST00000377860.1	C78283-203	1922	No protein	-	lncRNA		A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000377862.1	C78283-205	1274	No protein	-	lncRNA		-
ENSMUST00000377861.1	C78283-204	984	No protein	-	lncRNA		-
ENSMUST00000377870.1	C78283-213	961	No protein	-	lncRNA		-
ENSMUST00000377865.1	C78283-208	905	No protein	-	lncRNA		-
ENSMUST00000377869.1	C78283-212	891	No protein	-	lncRNA		-
ENSMUST00000377868.1	C78283-211	850	No protein	-	lncRNA		-
ENSMUST00000377863.1	C78283-206	695	No protein	-	lncRNA		-
ENSMUST00000377866.1	C78283-209	581	No protein	-	lncRNA		-
ENSMUST00000377867.1	C78283-210	335	No protein	-	lncRNA		-

.

Strains

.

Genomic alignments

Gene tree

Orthologues

Paralogues (Not available)

Families (Not available)

More views of comparative genomics data, such as multiple alignments and synteny, are available on the Location page for this gene.

.

Personal Data