Summary
- Splice variants
- Transcript comparison
- Gene alleles
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Comparative Genomics
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Ontologies
- GO: Anatomical entity
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Gene: A830019L24Rik ENSMUSG00000105923

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Description

RIKEN cDNA A830019L24 gene [Source:MGI Symbol;Acc:MGI:2443282]

Location

Chromosome 3: 142,948,433-143,054,319 forward strand.

GRCm39:CM000996.3

About this gene

This gene has 13 transcripts (splice variants).

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	Flags
ENSMUST00000317098.1	A830019L24Rik-203	1010	No protein	-	lncRNA		A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary,
ENSMUST00000317102.1	A830019L24Rik-207	3426	No protein	-	lncRNA		A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000198056.2	A830019L24Rik-202	3165	No protein	-	lncRNA		TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENSMUST00000317103.1	A830019L24Rik-208	2523	No protein	-	lncRNA		-
ENSMUST00000197226.6	A830019L24Rik-201	1669	No protein	-	lncRNA		TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000317104.1	A830019L24Rik-209	1357	No protein	-	lncRNA		-
ENSMUST00000317101.1	A830019L24Rik-206	1260	No protein	-	lncRNA		A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000317099.1	A830019L24Rik-204	1094	No protein	-	lncRNA		A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000317100.1	A830019L24Rik-205	1018	No protein	-	lncRNA		-
ENSMUST00000317106.1	A830019L24Rik-211	932	No protein	-	lncRNA		A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000317105.1	A830019L24Rik-210	755	No protein	-	lncRNA		-
ENSMUST00000317107.1	A830019L24Rik-212	751	No protein	-	lncRNA		-
ENSMUST00000317108.1	A830019L24Rik-213	542	No protein	-	lncRNA		A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,

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Strains

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Genomic alignments

Gene tree (Not available)

Orthologues (Not available)

Paralogues (Not available)

Families (Not available)

More views of comparative genomics data, such as multiple alignments and synteny, are available on the Location page for this gene.

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Personal Data