Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
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Ontologies
- GO: Anatomical entity
Phenotypes
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ID History
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Gene: Gm42797 ENSMUSG00000105664

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Description

predicted gene 42797 [Source:MGI Symbol;Acc:MGI:5662934]

Location

Chromosome 5: 114,065,570-114,072,470 reverse strand.

GRCm39:CM000998.3

About this gene

This gene has 18 transcripts (splice variants).

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	Flags
ENSMUST00000290105.1	Gm42797-202	226	No protein	-	lncRNA		A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary,
ENSMUST00000290120.1	Gm42797-217	1234	No protein	-	lncRNA		-
ENSMUST00000290114.1	Gm42797-211	838	No protein	-	lncRNA		A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000290116.1	Gm42797-213	833	No protein	-	lncRNA		-
ENSMUST00000290119.1	Gm42797-216	796	No protein	-	lncRNA		A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000290115.1	Gm42797-212	780	No protein	-	lncRNA		-
ENSMUST00000290109.1	Gm42797-206	769	No protein	-	lncRNA		-
ENSMUST00000290121.1	Gm42797-218	766	No protein	-	lncRNA		-
ENSMUST00000290117.1	Gm42797-214	754	No protein	-	lncRNA		A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000290118.1	Gm42797-215	729	No protein	-	lncRNA		-
ENSMUST00000290110.1	Gm42797-207	728	No protein	-	lncRNA		-
ENSMUST00000290113.1	Gm42797-210	723	No protein	-	lncRNA		A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000290112.1	Gm42797-209	708	No protein	-	lncRNA		-
ENSMUST00000290106.1	Gm42797-203	696	No protein	-	lncRNA		-
ENSMUST00000290107.1	Gm42797-204	682	No protein	-	lncRNA		-
ENSMUST00000290108.1	Gm42797-205	659	No protein	-	lncRNA		-
ENSMUST00000290111.1	Gm42797-208	651	No protein	-	lncRNA		-
ENSMUST00000197573.2	Gm42797-201	494	No protein	-	lncRNA		A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,

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Strains

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Genomic alignments

Gene tree (Not available)

Orthologues (Not available)

Paralogues (Not available)

Families (Not available)

More views of comparative genomics data, such as multiple alignments and synteny, are available on the Location page for this gene.

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Personal Data