Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
- Gene tree
- Gene gain/loss tree
- Orthologues
- Paralogues
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Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
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Pathway
Molecular interactions
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ID History
- Gene history

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Gene: 5033403F01Rik ENSMUSG00000096932

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Description

RIKEN cDNA 5033403F01 gene [Source:MGI Symbol;Acc:MGI:1923208]

Location

Chromosome 13: 39,132,104-39,190,673 forward strand.

GRCm39:CM001006.3

About this gene

This gene has 16 transcripts (splice variants).

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	Flags
ENSMUST00000269106.1	5033403F01Rik-202	902	No protein	-	lncRNA		A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary,
ENSMUST00000269112.1	5033403F01Rik-208	2418	No protein	-	lncRNA		A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000269113.1	5033403F01Rik-209	1872	No protein	-	lncRNA		A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000269110.1	5033403F01Rik-206	1784	No protein	-	lncRNA		-
ENSMUST00000181376.4	5033403F01Rik-201	1759	No protein	-	lncRNA		TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000269114.1	5033403F01Rik-210	1602	No protein	-	lncRNA		-
ENSMUST00000269117.1	5033403F01Rik-213	1538	No protein	-	lncRNA		-
ENSMUST00000269116.1	5033403F01Rik-212	1521	No protein	-	lncRNA		-
ENSMUST00000269111.1	5033403F01Rik-207	1456	No protein	-	lncRNA		-
ENSMUST00000269109.1	5033403F01Rik-205	1441	No protein	-	lncRNA		-
ENSMUST00000269108.1	5033403F01Rik-204	1286	No protein	-	lncRNA		-
ENSMUST00000269119.1	5033403F01Rik-214	1286	No protein	-	lncRNA		-
ENSMUST00000269115.1	5033403F01Rik-211	1250	No protein	-	lncRNA		-
ENSMUST00000269120.1	5033403F01Rik-215	853	No protein	-	lncRNA		-
ENSMUST00000269107.1	5033403F01Rik-203	540	No protein	-	lncRNA		A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000269121.1	5033403F01Rik-216	425	No protein	-	lncRNA		-

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Strains

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Genomic alignments

Gene tree (Not available)

Orthologues (Not available)

Paralogues (Not available)

Families (Not available)

More views of comparative genomics data, such as multiple alignments and synteny, are available on the Location page for this gene.

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Personal Data