Gene: Lhx1os ENSMUSG00000087211

Description

LIM homeobox 1, opposite strand [Source:MGI Symbol;Acc:MGI:1925615]

Gene Synonyms

1500016L03Rik, Lhx1as, ln-CR7

Location

Chromosome 11: 84,404,249-84,430,095 forward strand.

GRCm39:CM001004.3

About this gene

This gene has 81 transcripts (splice variants) and is associated with 1 phenotype.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	Flags
ENSMUST00000339906.1	Lhx1os-219	544	No protein	-	lncRNA	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary,
ENSMUST00000339975.1	Lhx1os-275	2414	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000241279.1	Lhx1os-205	1844	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000246506.2	Lhx1os-218	1770	No protein	-	lncRNA	-
ENSMUST00000244033.2	Lhx1os-209	1713	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000339954.1	Lhx1os-260	1712	No protein	-	lncRNA	-
ENSMUST00000244974.1	Lhx1os-211	1673	No protein	-	lncRNA	-
ENSMUST00000240778.1	Lhx1os-204	1521	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000339931.1	Lhx1os-244	1451	No protein	-	lncRNA	-
ENSMUST00000339932.1	Lhx1os-245	1162	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000245143.1	Lhx1os-212	1110	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000339914.1	Lhx1os-227	1104	No protein	-	lncRNA	-
ENSMUST00000244576.1	Lhx1os-210	1087	No protein	-	lncRNA	-
ENSMUST00000339913.1	Lhx1os-226	1040	No protein	-	lncRNA	-
ENSMUST00000134800.10	Lhx1os-203	977	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENSMUST00000128121.4	Lhx1os-202	977	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000339952.1	Lhx1os-259	942	No protein	-	lncRNA	-
ENSMUST00000339916.1	Lhx1os-229	934	No protein	-	lncRNA	-
ENSMUST00000339915.1	Lhx1os-228	916	No protein	-	lncRNA	-
ENSMUST00000245919.2	Lhx1os-215	901	No protein	-	lncRNA	-
ENSMUST00000243874.1	Lhx1os-208	894	No protein	-	lncRNA	-
ENSMUST00000339968.1	Lhx1os-268	868	No protein	-	lncRNA	-
ENSMUST00000126072.10	Lhx1os-201	797	No protein	-	lncRNA	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENSMUST00000339962.1	Lhx1os-264	792	No protein	-	lncRNA	-
ENSMUST00000339977.1	Lhx1os-277	771	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000339908.1	Lhx1os-221	770	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000339919.1	Lhx1os-232	761	No protein	-	lncRNA	-
ENSMUST00000339960.1	Lhx1os-263	760	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000339907.1	Lhx1os-220	744	No protein	-	lncRNA	-
ENSMUST00000339917.1	Lhx1os-230	743	No protein	-	lncRNA	-
ENSMUST00000242903.2	Lhx1os-207	736	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000339970.1	Lhx1os-270	724	No protein	-	lncRNA	-
ENSMUST00000339923.1	Lhx1os-236	709	No protein	-	lncRNA	-
ENSMUST00000245683.2	Lhx1os-214	704	No protein	-	lncRNA	-
ENSMUST00000339935.1	Lhx1os-248	702	No protein	-	lncRNA	-
ENSMUST00000339948.1	Lhx1os-257	694	No protein	-	lncRNA	-
ENSMUST00000339971.1	Lhx1os-271	692	No protein	-	lncRNA	-
ENSMUST00000339969.1	Lhx1os-269	679	No protein	-	lncRNA	-
ENSMUST00000339926.1	Lhx1os-239	678	No protein	-	lncRNA	-
ENSMUST00000339978.1	Lhx1os-278	675	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000339911.1	Lhx1os-224	672	No protein	-	lncRNA	-
ENSMUST00000339966.1	Lhx1os-266	671	No protein	-	lncRNA	-
ENSMUST00000339949.1	Lhx1os-258	666	No protein	-	lncRNA	-
ENSMUST00000339973.1	Lhx1os-273	661	No protein	-	lncRNA	-
ENSMUST00000246116.2	Lhx1os-216	656	No protein	-	lncRNA	-
ENSMUST00000339921.1	Lhx1os-234	645	No protein	-	lncRNA	-
ENSMUST00000339918.1	Lhx1os-231	641	No protein	-	lncRNA	-
ENSMUST00000339920.1	Lhx1os-233	636	No protein	-	lncRNA	-
ENSMUST00000339937.1	Lhx1os-250	630	No protein	-	lncRNA	-
ENSMUST00000339939.1	Lhx1os-252	629	No protein	-	lncRNA	-
ENSMUST00000339909.1	Lhx1os-222	627	No protein	-	lncRNA	-
ENSMUST00000339924.1	Lhx1os-237	623	No protein	-	lncRNA	-
ENSMUST00000339942.1	Lhx1os-254	618	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000339979.1	Lhx1os-279	610	No protein	-	lncRNA	-
ENSMUST00000245146.2	Lhx1os-213	609	No protein	-	lncRNA	-
ENSMUST00000339912.1	Lhx1os-225	606	No protein	-	lncRNA	-
ENSMUST00000339929.1	Lhx1os-242	606	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000339928.1	Lhx1os-241	605	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000339910.1	Lhx1os-223	604	No protein	-	lncRNA	-
ENSMUST00000339940.1	Lhx1os-253	603	No protein	-	lncRNA	-
ENSMUST00000339976.1	Lhx1os-276	591	No protein	-	lncRNA	-
ENSMUST00000339972.1	Lhx1os-272	575	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000339964.1	Lhx1os-265	569	No protein	-	lncRNA	-
ENSMUST00000246208.2	Lhx1os-217	559	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000339980.1	Lhx1os-280	558	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000339946.1	Lhx1os-256	556	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000242542.2	Lhx1os-206	554	No protein	-	lncRNA	-
ENSMUST00000339974.1	Lhx1os-274	553	No protein	-	lncRNA	-
ENSMUST00000339967.1	Lhx1os-267	552	No protein	-	lncRNA	-
ENSMUST00000339933.1	Lhx1os-246	529	No protein	-	lncRNA	-
ENSMUST00000339927.1	Lhx1os-240	528	No protein	-	lncRNA	-
ENSMUST00000339936.1	Lhx1os-249	525	No protein	-	lncRNA	-
ENSMUST00000339925.1	Lhx1os-238	522	No protein	-	lncRNA	-
ENSMUST00000339922.1	Lhx1os-235	481	No protein	-	lncRNA	-
ENSMUST00000339981.1	Lhx1os-281	480	No protein	-	lncRNA	-
ENSMUST00000339958.1	Lhx1os-262	468	No protein	-	lncRNA	-
ENSMUST00000339956.1	Lhx1os-261	458	No protein	-	lncRNA	-
ENSMUST00000339938.1	Lhx1os-251	446	No protein	-	lncRNA	-
ENSMUST00000339934.1	Lhx1os-247	442	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000339930.1	Lhx1os-243	428	No protein	-	lncRNA	-
ENSMUST00000339944.1	Lhx1os-255	340	No protein	-	lncRNA	-