Summary
- Splice variants
- Transcript comparison
- Gene alleles
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Comparative Genomics
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Ontologies
- GO: Anatomical entity
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Gene: 5330413P13Rik ENSMUSG00000086822

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Description

RIKEN cDNA 5330413P13 gene [Source:MGI Symbol;Acc:MGI:3041161]

Location

Chromosome 2: 131,590,002-131,689,656 reverse strand.

GRCm39:CM000995.3

About this gene

This gene has 17 transcripts (splice variants).

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	Flags
ENSMUST00000326258.1	5330413P13Rik-207	518	No protein	-	lncRNA		A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000143453.2	5330413P13Rik-202	3630	No protein	-	lncRNA		A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000150466.2	5330413P13Rik-203	2173	No protein	-	lncRNA		A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000140443.2	5330413P13Rik-201	2054	No protein	-	lncRNA		TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000210606.2	5330413P13Rik-204	1464	No protein	-	lncRNA		TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENSMUST00000210961.2	5330413P13Rik-205	913	No protein	-	lncRNA		TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENSMUST00000326268.1	5330413P13Rik-217	888	No protein	-	lncRNA		-
ENSMUST00000326260.1	5330413P13Rik-209	789	No protein	-	lncRNA		-
ENSMUST00000326261.1	5330413P13Rik-210	620	No protein	-	lncRNA		A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000326263.1	5330413P13Rik-212	560	No protein	-	lncRNA		-
ENSMUST00000326267.1	5330413P13Rik-216	468	No protein	-	lncRNA		-
ENSMUST00000326259.1	5330413P13Rik-208	444	No protein	-	lncRNA		-
ENSMUST00000326262.1	5330413P13Rik-211	393	No protein	-	lncRNA		-
ENSMUST00000326266.1	5330413P13Rik-215	391	No protein	-	lncRNA		A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000326265.1	5330413P13Rik-214	376	No protein	-	lncRNA		-
ENSMUST00000326264.1	5330413P13Rik-213	351	No protein	-	lncRNA		-
ENSMUST00000242955.2	5330413P13Rik-206	324	No protein	-	lncRNA		-

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Strains

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Genomic alignments

Gene tree (Not available)

Orthologues (Not available)

Paralogues (Not available)

Families (Not available)

More views of comparative genomics data, such as multiple alignments and synteny, are available on the Location page for this gene.

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Personal Data