Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
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- Gene gain/loss tree
- Orthologues
- Paralogues
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Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
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Pathway
Molecular interactions
Regulation
External references
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ID History
- Gene history

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Gene: Gm11827 ENSMUSG00000086765

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Description

predicted gene 11827 [Source:MGI Symbol;Acc:MGI:3649801]

Location

Chromosome 4: 11,122,805-11,127,004 forward strand.

GRCm39:CM000997.3

About this gene

This gene has 15 transcripts (splice variants).

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	Flags
ENSMUST00000151138.8	Gm11827-202	1112	No protein	-	lncRNA		A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENSMUST00000371372.1	Gm11827-214	1578	No protein	-	lncRNA		A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000371366.1	Gm11827-208	1432	No protein	-	lncRNA		-
ENSMUST00000142297.3	Gm11827-201	1304	No protein	-	lncRNA		TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000371371.1	Gm11827-213	1300	No protein	-	lncRNA		-
ENSMUST00000371367.1	Gm11827-209	1286	No protein	-	lncRNA		-
ENSMUST00000371363.1	Gm11827-205	1269	No protein	-	lncRNA		-
ENSMUST00000371365.1	Gm11827-207	1249	No protein	-	lncRNA		-
ENSMUST00000244751.2	Gm11827-203	1187	No protein	-	lncRNA		-
ENSMUST00000371364.1	Gm11827-206	1184	No protein	-	lncRNA		-
ENSMUST00000371368.1	Gm11827-210	1040	No protein	-	lncRNA		-
ENSMUST00000371373.1	Gm11827-215	951	No protein	-	lncRNA		-
ENSMUST00000371362.1	Gm11827-204	924	No protein	-	lncRNA		-
ENSMUST00000371370.1	Gm11827-212	911	No protein	-	lncRNA		-
ENSMUST00000371369.1	Gm11827-211	757	No protein	-	lncRNA		-

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Strains

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Genomic alignments

Gene tree (Not available)

Orthologues (Not available)

Paralogues (Not available)

Families (Not available)

More views of comparative genomics data, such as multiple alignments and synteny, are available on the Location page for this gene.

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Personal Data