Gene: 1700123O12Rik ENSMUSG00000086080

Description

RIKEN cDNA 1700123O12 gene [Source:MGI Symbol;Acc:MGI:1920874]

Location

Chromosome 4: 10,479,959-10,797,864 reverse strand.

GRCm39:CM000997.3

About this gene

This gene has 45 transcripts (splice variants).

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	Flags
ENSMUST00000146783.8	1700123O12Rik-204	577	No protein	-	lncRNA	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000315910.1	1700123O12Rik-208	1340	No protein	-	lncRNA	-
ENSMUST00000315947.1	1700123O12Rik-245	1265	No protein	-	lncRNA	-
ENSMUST00000141312.3	1700123O12Rik-202	1146	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENSMUST00000315923.1	1700123O12Rik-221	1073	No protein	-	lncRNA	-
ENSMUST00000315939.1	1700123O12Rik-237	1005	No protein	-	lncRNA	-
ENSMUST00000315918.1	1700123O12Rik-216	1001	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000315911.1	1700123O12Rik-209	971	No protein	-	lncRNA	-
ENSMUST00000315936.1	1700123O12Rik-234	950	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000315934.1	1700123O12Rik-232	892	No protein	-	lncRNA	-
ENSMUST00000315943.1	1700123O12Rik-241	884	No protein	-	lncRNA	-
ENSMUST00000315919.1	1700123O12Rik-217	882	No protein	-	lncRNA	-
ENSMUST00000315941.1	1700123O12Rik-239	868	No protein	-	lncRNA	-
ENSMUST00000315912.1	1700123O12Rik-210	836	No protein	-	lncRNA	-
ENSMUST00000315940.1	1700123O12Rik-238	829	No protein	-	lncRNA	-
ENSMUST00000315913.1	1700123O12Rik-211	819	No protein	-	lncRNA	-
ENSMUST00000315915.1	1700123O12Rik-213	810	No protein	-	lncRNA	-
ENSMUST00000315914.1	1700123O12Rik-212	809	No protein	-	lncRNA	-
ENSMUST00000315930.1	1700123O12Rik-228	797	No protein	-	lncRNA	-
ENSMUST00000315935.1	1700123O12Rik-233	792	No protein	-	lncRNA	-
ENSMUST00000315931.1	1700123O12Rik-229	789	No protein	-	lncRNA	-
ENSMUST00000315946.1	1700123O12Rik-244	788	No protein	-	lncRNA	-
ENSMUST00000315937.1	1700123O12Rik-235	778	No protein	-	lncRNA	-
ENSMUST00000315938.1	1700123O12Rik-236	742	No protein	-	lncRNA	-
ENSMUST00000315927.1	1700123O12Rik-225	725	No protein	-	lncRNA	-
ENSMUST00000315933.1	1700123O12Rik-231	722	No protein	-	lncRNA	-
ENSMUST00000315926.1	1700123O12Rik-224	718	No protein	-	lncRNA	-
ENSMUST00000315929.1	1700123O12Rik-227	711	No protein	-	lncRNA	-
ENSMUST00000315945.1	1700123O12Rik-243	688	No protein	-	lncRNA	-
ENSMUST00000315932.1	1700123O12Rik-230	654	No protein	-	lncRNA	-
ENSMUST00000315921.1	1700123O12Rik-219	648	No protein	-	lncRNA	-
ENSMUST00000315922.1	1700123O12Rik-220	643	No protein	-	lncRNA	-
ENSMUST00000315916.1	1700123O12Rik-214	629	No protein	-	lncRNA	-
ENSMUST00000315924.1	1700123O12Rik-222	620	No protein	-	lncRNA	-
ENSMUST00000133829.9	1700123O12Rik-201	604	No protein	-	lncRNA	TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENSMUST00000315925.1	1700123O12Rik-223	602	No protein	-	lncRNA	-
ENSMUST00000315942.1	1700123O12Rik-240	596	No protein	-	lncRNA	-
ENSMUST00000315944.1	1700123O12Rik-242	595	No protein	-	lncRNA	-
ENSMUST00000315920.1	1700123O12Rik-218	522	No protein	-	lncRNA	-
ENSMUST00000315917.1	1700123O12Rik-215	521	No protein	-	lncRNA	-
ENSMUST00000258153.1	1700123O12Rik-207	456	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000145856.2	1700123O12Rik-203	425	No protein	-	lncRNA	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENSMUST00000315928.1	1700123O12Rik-226	406	No protein	-	lncRNA	-
ENSMUST00000258151.1	1700123O12Rik-205	375	No protein	-	lncRNA	-
ENSMUST00000258152.1	1700123O12Rik-206	330	No protein	-	lncRNA	-