Summary
- Splice variants
- Transcript comparison
- Gene alleles
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Comparative Genomics
- Genomic alignments
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Ontologies
- GO: Anatomical entity
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ID History
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Gene: Gm16084 ENSMUSG00000086060

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Description

predicted gene 16084 [Source:MGI Symbol;Acc:MGI:3801938]

Location

Chromosome 12: 107,045,619-107,126,548 reverse strand.

GRCm39:CM001005.3

About this gene

This gene has 18 transcripts (splice variants).

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	Flags
ENSMUST00000313391.1	Gm16084-203	1092	No protein	-	lncRNA		A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000313398.1	Gm16084-210	2306	No protein	-	lncRNA		A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000313392.1	Gm16084-204	2242	No protein	-	lncRNA		A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000313528.1	Gm16084-215	1331	No protein	-	lncRNA		A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000313527.1	Gm16084-214	1019	No protein	-	lncRNA		A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000148122.3	Gm16084-202	945	No protein	-	lncRNA		TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENSMUST00000313399.1	Gm16084-211	877	No protein	-	lncRNA		-
ENSMUST00000313395.1	Gm16084-207	838	No protein	-	lncRNA		-
ENSMUST00000313393.1	Gm16084-205	814	No protein	-	lncRNA		-
ENSMUST00000313529.1	Gm16084-216	808	No protein	-	lncRNA		-
ENSMUST00000313397.1	Gm16084-209	798	No protein	-	lncRNA		-
ENSMUST00000313396.1	Gm16084-208	795	No protein	-	lncRNA		-
ENSMUST00000313394.1	Gm16084-206	621	No protein	-	lncRNA		A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000313401.1	Gm16084-213	429	No protein	-	lncRNA		-
ENSMUST00000313400.1	Gm16084-212	394	No protein	-	lncRNA		-
ENSMUST00000143652.2	Gm16084-201	371	No protein	-	lncRNA		A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENSMUST00000313530.1	Gm16084-217	351	No protein	-	lncRNA		-
ENSMUST00000313531.1	Gm16084-218	326	No protein	-	lncRNA		-

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Strains

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Genomic alignments

Gene tree (Not available)

Orthologues (Not available)

Paralogues (Not available)

Families (Not available)

More views of comparative genomics data, such as multiple alignments and synteny, are available on the Location page for this gene.

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Personal Data