Summary
- Splice variants
- Transcript comparison
- Gene alleles
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Comparative Genomics
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Ontologies
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Phenotypes
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ID History
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Gene: A330035P11Rik ENSMUSG00000085615

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Description

RIKEN cDNA A330035P11 gene [Source:MGI Symbol;Acc:MGI:2442610]

Location

Chromosome 14: 122,335,360-122,344,970 reverse strand.

GRCm39:CM001007.3

About this gene

This gene has 12 transcripts (splice variants).

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	Flags
ENSMUST00000255985.1	A330035P11Rik-205	1568	No protein	-	lncRNA		A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000144926.3	A330035P11Rik-202	3104	No protein	-	lncRNA		A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000243528.2	A330035P11Rik-204	2859	No protein	-	lncRNA		A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000255989.1	A330035P11Rik-209	2775	No protein	-	lncRNA		-
ENSMUST00000131416.3	A330035P11Rik-201	2257	No protein	-	lncRNA		TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000241000.2	A330035P11Rik-203	2236	No protein	-	lncRNA		-
ENSMUST00000255986.1	A330035P11Rik-206	2212	No protein	-	lncRNA		-
ENSMUST00000255987.1	A330035P11Rik-207	1355	No protein	-	lncRNA		A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000255988.1	A330035P11Rik-208	1313	No protein	-	lncRNA		-
ENSMUST00000255990.1	A330035P11Rik-210	1249	No protein	-	lncRNA		-
ENSMUST00000255991.1	A330035P11Rik-211	698	No protein	-	lncRNA		-
ENSMUST00000255992.1	A330035P11Rik-212	451	No protein	-	lncRNA		-

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Strains

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Genomic alignments

Gene tree (Not available)

Orthologues (Not available)

Paralogues (Not available)

Families (Not available)

More views of comparative genomics data, such as multiple alignments and synteny, are available on the Location page for this gene.

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Personal Data