Gene: Snhg17 ENSMUSG00000085385

Description

small nucleolar RNA host gene 17 [Source:MGI Symbol;Acc:MGI:1915358]

Gene Synonyms

9430008C03Rik

Location

Chromosome 2: 158,195,620-158,204,194 reverse strand.

GRCm39:CM000995.3

About this gene

This gene has 188 transcripts (splice variants).

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	Flags
ENSMUST00000149667.9	Snhg17-204	3911	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENSMUST00000154030.9	Snhg17-207	2029	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENSMUST00000341273.1	Snhg17-288	3032	No protein	-	lncRNA	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000241390.2	Snhg17-220	4316	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000186993.3	Snhg17-209	3922	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL NA: A transcript that was not analysed for TSL. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:NA,
ENSMUST00000154242.4	Snhg17-208	3601	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENSMUST00000242779.2	Snhg17-233	3392	No protein	-	lncRNA	-
ENSMUST00000341342.1	Snhg17-354	3364	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000151331.4	Snhg17-205	3271	No protein	-	lncRNA	TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENSMUST00000242851.2	Snhg17-234	3230	No protein	-	lncRNA	-
ENSMUST00000241156.2	Snhg17-217	3177	No protein	-	lncRNA	-
ENSMUST00000133449.10	Snhg17-201	3160	No protein	-	lncRNA	TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000241034.2	Snhg17-214	3105	No protein	-	lncRNA	-
ENSMUST00000240906.2	Snhg17-212	3090	No protein	-	lncRNA	-
ENSMUST00000341286.1	Snhg17-299	3034	No protein	-	lncRNA	-
ENSMUST00000341350.1	Snhg17-362	3018	No protein	-	lncRNA	-
ENSMUST00000341346.1	Snhg17-358	2936	No protein	-	lncRNA	-
ENSMUST00000241768.2	Snhg17-223	2921	No protein	-	lncRNA	-
ENSMUST00000244110.2	Snhg17-245	2899	No protein	-	lncRNA	-
ENSMUST00000246988.2	Snhg17-279	2838	No protein	-	lncRNA	-
ENSMUST00000246527.1	Snhg17-271	2817	No protein	-	lncRNA	-
ENSMUST00000341310.1	Snhg17-323	2784	No protein	-	lncRNA	-
ENSMUST00000341323.1	Snhg17-336	2662	No protein	-	lncRNA	-
ENSMUST00000341343.1	Snhg17-355	2631	No protein	-	lncRNA	-
ENSMUST00000341280.1	Snhg17-293	2362	No protein	-	lncRNA	-
ENSMUST00000247293.1	Snhg17-285	2349	No protein	-	lncRNA	-
ENSMUST00000341339.1	Snhg17-352	2301	No protein	-	lncRNA	-
ENSMUST00000244056.1	Snhg17-244	2284	No protein	-	lncRNA	-
ENSMUST00000341299.1	Snhg17-312	2246	No protein	-	lncRNA	-
ENSMUST00000244620.2	Snhg17-249	2153	No protein	-	lncRNA	-
ENSMUST00000341288.1	Snhg17-301	2141	No protein	-	lncRNA	-
ENSMUST00000244782.1	Snhg17-252	2139	No protein	-	lncRNA	-
ENSMUST00000341302.1	Snhg17-315	2137	No protein	-	lncRNA	-
ENSMUST00000341335.1	Snhg17-348	2107	No protein	-	lncRNA	-
ENSMUST00000244891.2	Snhg17-253	2089	No protein	-	lncRNA	-
ENSMUST00000341295.1	Snhg17-308	2085	No protein	-	lncRNA	-
ENSMUST00000247299.1	Snhg17-286	2084	No protein	-	lncRNA	-
ENSMUST00000242590.2	Snhg17-231	1988	No protein	-	lncRNA	-
ENSMUST00000341317.1	Snhg17-330	1966	No protein	-	lncRNA	-
ENSMUST00000243611.1	Snhg17-240	1917	No protein	-	lncRNA	-
ENSMUST00000246719.2	Snhg17-275	1886	No protein	-	lncRNA	-
ENSMUST00000240884.2	Snhg17-211	1873	No protein	-	lncRNA	-
ENSMUST00000341319.1	Snhg17-332	1867	No protein	-	lncRNA	-
ENSMUST00000341331.1	Snhg17-344	1865	No protein	-	lncRNA	-
ENSMUST00000341318.1	Snhg17-331	1739	No protein	-	lncRNA	-
ENSMUST00000341301.1	Snhg17-314	1678	No protein	-	lncRNA	-
ENSMUST00000246547.2	Snhg17-272	1655	No protein	-	lncRNA	-
ENSMUST00000141809.9	Snhg17-203	1615	No protein	-	lncRNA	TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000341308.1	Snhg17-321	1582	No protein	-	lncRNA	-
ENSMUST00000244399.2	Snhg17-248	1464	No protein	-	lncRNA	-
ENSMUST00000188429.3	Snhg17-210	1451	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL NA: A transcript that was not analysed for TSL. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:NA,
ENSMUST00000245772.1	Snhg17-259	1438	No protein	-	lncRNA	-
ENSMUST00000246925.1	Snhg17-278	1390	No protein	-	lncRNA	-
ENSMUST00000241141.2	Snhg17-216	1363	No protein	-	lncRNA	-
ENSMUST00000240979.2	Snhg17-213	1363	No protein	-	lncRNA	-
ENSMUST00000246155.2	Snhg17-264	1348	No protein	-	lncRNA	-
ENSMUST00000243690.1	Snhg17-242	1344	No protein	-	lncRNA	-
ENSMUST00000341285.1	Snhg17-298	1329	No protein	-	lncRNA	-
ENSMUST00000138592.3	Snhg17-202	1325	No protein	-	lncRNA	TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENSMUST00000341306.1	Snhg17-319	1304	No protein	-	lncRNA	-
ENSMUST00000246829.1	Snhg17-276	1294	No protein	-	lncRNA	-
ENSMUST00000341337.1	Snhg17-350	1288	No protein	-	lncRNA	-
ENSMUST00000341275.1	Snhg17-290	1285	No protein	-	lncRNA	-
ENSMUST00000245468.2	Snhg17-256	1262	No protein	-	lncRNA	-
ENSMUST00000244641.2	Snhg17-250	1261	No protein	-	lncRNA	-
ENSMUST00000341325.1	Snhg17-338	1258	No protein	-	lncRNA	-
ENSMUST00000246319.2	Snhg17-267	1254	No protein	-	lncRNA	-
ENSMUST00000242338.2	Snhg17-228	1239	No protein	-	lncRNA	-
ENSMUST00000241328.2	Snhg17-219	1238	No protein	-	lncRNA	-
ENSMUST00000246264.2	Snhg17-266	1237	No protein	-	lncRNA	-
ENSMUST00000247255.1	Snhg17-283	1230	No protein	-	lncRNA	-
ENSMUST00000243444.2	Snhg17-239	1222	No protein	-	lncRNA	-
ENSMUST00000246673.2	Snhg17-274	1221	No protein	-	lncRNA	-
ENSMUST00000241430.2	Snhg17-221	1220	No protein	-	lncRNA	-
ENSMUST00000242141.1	Snhg17-226	1218	No protein	-	lncRNA	-
ENSMUST00000341351.1	Snhg17-363	1202	No protein	-	lncRNA	-
ENSMUST00000247134.2	Snhg17-280	1199	No protein	-	lncRNA	-
ENSMUST00000341291.1	Snhg17-304	1198	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000243182.1	Snhg17-237	1197	No protein	-	lncRNA	-
ENSMUST00000341338.1	Snhg17-351	1197	No protein	-	lncRNA	-
ENSMUST00000341274.1	Snhg17-289	1192	No protein	-	lncRNA	-
ENSMUST00000244199.2	Snhg17-246	1182	No protein	-	lncRNA	-
ENSMUST00000242470.1	Snhg17-230	1179	No protein	-	lncRNA	-
ENSMUST00000245424.2	Snhg17-255	1166	No protein	-	lncRNA	-
ENSMUST00000245234.1	Snhg17-254	1165	No protein	-	lncRNA	-
ENSMUST00000246392.2	Snhg17-268	1161	No protein	-	lncRNA	-
ENSMUST00000341352.1	Snhg17-364	1161	No protein	-	lncRNA	-
ENSMUST00000341330.1	Snhg17-343	1157	No protein	-	lncRNA	-
ENSMUST00000341305.1	Snhg17-318	1156	No protein	-	lncRNA	-
ENSMUST00000242263.1	Snhg17-227	1155	No protein	-	lncRNA	-
ENSMUST00000241272.2	Snhg17-218	1149	No protein	-	lncRNA	-
ENSMUST00000341348.1	Snhg17-360	1147	No protein	-	lncRNA	-
ENSMUST00000341349.1	Snhg17-361	1147	No protein	-	lncRNA	-
ENSMUST00000246484.2	Snhg17-270	1146	No protein	-	lncRNA	-
ENSMUST00000341374.1	Snhg17-386	1144	No protein	-	lncRNA	-
ENSMUST00000242018.2	Snhg17-225	1143	No protein	-	lncRNA	-
ENSMUST00000241993.2	Snhg17-224	1136	No protein	-	lncRNA	-
ENSMUST00000244675.2	Snhg17-251	1136	No protein	-	lncRNA	-
ENSMUST00000341287.1	Snhg17-300	1133	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000244303.1	Snhg17-247	1127	No protein	-	lncRNA	-
ENSMUST00000341359.1	Snhg17-371	1127	No protein	-	lncRNA	-
ENSMUST00000247185.2	Snhg17-281	1126	No protein	-	lncRNA	-
ENSMUST00000242651.1	Snhg17-232	1121	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000341314.1	Snhg17-327	1116	No protein	-	lncRNA	-
ENSMUST00000341375.1	Snhg17-387	1100	No protein	-	lncRNA	-
ENSMUST00000341289.1	Snhg17-302	1099	No protein	-	lncRNA	-
ENSMUST00000341290.1	Snhg17-303	1093	No protein	-	lncRNA	-
ENSMUST00000246894.2	Snhg17-277	1092	No protein	-	lncRNA	-
ENSMUST00000341307.1	Snhg17-320	1081	No protein	-	lncRNA	-
ENSMUST00000341344.1	Snhg17-356	1076	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000243123.1	Snhg17-235	1064	No protein	-	lncRNA	-
ENSMUST00000341284.1	Snhg17-297	1063	No protein	-	lncRNA	-
ENSMUST00000341292.1	Snhg17-305	1061	No protein	-	lncRNA	-
ENSMUST00000243770.2	Snhg17-243	1060	No protein	-	lncRNA	-
ENSMUST00000341368.1	Snhg17-380	1059	No protein	-	lncRNA	-
ENSMUST00000341354.1	Snhg17-366	1058	No protein	-	lncRNA	-
ENSMUST00000341365.1	Snhg17-377	1052	No protein	-	lncRNA	-
ENSMUST00000341279.1	Snhg17-292	1049	No protein	-	lncRNA	-
ENSMUST00000152125.8	Snhg17-206	1046	No protein	-	lncRNA	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENSMUST00000242413.1	Snhg17-229	1039	No protein	-	lncRNA	-
ENSMUST00000245711.1	Snhg17-258	1034	No protein	-	lncRNA	-
ENSMUST00000243663.1	Snhg17-241	1032	No protein	-	lncRNA	-
ENSMUST00000341334.1	Snhg17-347	1025	No protein	-	lncRNA	-
ENSMUST00000341360.1	Snhg17-372	1019	No protein	-	lncRNA	-
ENSMUST00000246135.1	Snhg17-263	1015	No protein	-	lncRNA	-
ENSMUST00000341329.1	Snhg17-342	1004	No protein	-	lncRNA	-
ENSMUST00000246445.1	Snhg17-269	996	No protein	-	lncRNA	-
ENSMUST00000341357.1	Snhg17-369	993	No protein	-	lncRNA	-
ENSMUST00000241120.2	Snhg17-215	990	No protein	-	lncRNA	-
ENSMUST00000341300.1	Snhg17-313	987	No protein	-	lncRNA	-
ENSMUST00000341366.1	Snhg17-378	982	No protein	-	lncRNA	-
ENSMUST00000247345.2	Snhg17-287	973	No protein	-	lncRNA	-
ENSMUST00000341320.1	Snhg17-333	972	No protein	-	lncRNA	-
ENSMUST00000243141.1	Snhg17-236	962	No protein	-	lncRNA	-
ENSMUST00000341303.1	Snhg17-316	960	No protein	-	lncRNA	-
ENSMUST00000245905.2	Snhg17-261	952	No protein	-	lncRNA	-
ENSMUST00000341369.1	Snhg17-381	948	No protein	-	lncRNA	-
ENSMUST00000341296.1	Snhg17-309	941	No protein	-	lncRNA	-
ENSMUST00000341312.1	Snhg17-325	935	No protein	-	lncRNA	-
ENSMUST00000341336.1	Snhg17-349	935	No protein	-	lncRNA	-
ENSMUST00000243247.1	Snhg17-238	929	No protein	-	lncRNA	-
ENSMUST00000341311.1	Snhg17-324	916	No protein	-	lncRNA	-
ENSMUST00000341278.1	Snhg17-291	915	No protein	-	lncRNA	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000341332.1	Snhg17-345	913	No protein	-	lncRNA	-
ENSMUST00000247252.2	Snhg17-282	911	No protein	-	lncRNA	-
ENSMUST00000341309.1	Snhg17-322	909	No protein	-	lncRNA	-
ENSMUST00000341321.1	Snhg17-334	909	No protein	-	lncRNA	-
ENSMUST00000241685.2	Snhg17-222	905	No protein	-	lncRNA	-
ENSMUST00000341364.1	Snhg17-376	899	No protein	-	lncRNA	-
ENSMUST00000341376.1	Snhg17-388	897	No protein	-	lncRNA	-
ENSMUST00000245670.1	Snhg17-257	888	No protein	-	lncRNA	-
ENSMUST00000341361.1	Snhg17-373	882	No protein	-	lncRNA	-
ENSMUST00000341322.1	Snhg17-335	877	No protein	-	lncRNA	-
ENSMUST00000341294.1	Snhg17-307	875	No protein	-	lncRNA	-
ENSMUST00000341297.1	Snhg17-310	870	No protein	-	lncRNA	-
ENSMUST00000341367.1	Snhg17-379	867	No protein	-	lncRNA	-
ENSMUST00000246588.2	Snhg17-273	864	No protein	-	lncRNA	-
ENSMUST00000341304.1	Snhg17-317	863	No protein	-	lncRNA	-
ENSMUST00000341326.1	Snhg17-339	863	No protein	-	lncRNA	-
ENSMUST00000246207.1	Snhg17-265	862	No protein	-	lncRNA	-
ENSMUST00000341313.1	Snhg17-326	861	No protein	-	lncRNA	-
ENSMUST00000341327.1	Snhg17-340	859	No protein	-	lncRNA	-
ENSMUST00000341370.1	Snhg17-382	857	No protein	-	lncRNA	-
ENSMUST00000341293.1	Snhg17-306	855	No protein	-	lncRNA	-
ENSMUST00000341324.1	Snhg17-337	828	No protein	-	lncRNA	-
ENSMUST00000245937.2	Snhg17-262	823	No protein	-	lncRNA	-
ENSMUST00000341363.1	Snhg17-375	823	No protein	-	lncRNA	-
ENSMUST00000341347.1	Snhg17-359	817	No protein	-	lncRNA	-
ENSMUST00000341328.1	Snhg17-341	816	No protein	-	lncRNA	-
ENSMUST00000341356.1	Snhg17-368	796	No protein	-	lncRNA	-
ENSMUST00000341333.1	Snhg17-346	795	No protein	-	lncRNA	-
ENSMUST00000341345.1	Snhg17-357	785	No protein	-	lncRNA	-
ENSMUST00000341316.1	Snhg17-329	772	No protein	-	lncRNA	-
ENSMUST00000341371.1	Snhg17-383	746	No protein	-	lncRNA	-
ENSMUST00000341298.1	Snhg17-311	742	No protein	-	lncRNA	-
ENSMUST00000341283.1	Snhg17-296	732	No protein	-	lncRNA	-
ENSMUST00000341315.1	Snhg17-328	732	No protein	-	lncRNA	-
ENSMUST00000341353.1	Snhg17-365	732	No protein	-	lncRNA	-
ENSMUST00000341355.1	Snhg17-367	704	No protein	-	lncRNA	-
ENSMUST00000341358.1	Snhg17-370	696	No protein	-	lncRNA	-
ENSMUST00000341281.1	Snhg17-294	683	No protein	-	lncRNA	-
ENSMUST00000341341.1	Snhg17-353	681	No protein	-	lncRNA	-
ENSMUST00000341362.1	Snhg17-374	664	No protein	-	lncRNA	-
ENSMUST00000341372.1	Snhg17-384	641	No protein	-	lncRNA	-
ENSMUST00000245796.2	Snhg17-260	618	No protein	-	lncRNA	-
ENSMUST00000247266.2	Snhg17-284	468	No protein	-	lncRNA	-
ENSMUST00000341373.1	Snhg17-385	465	No protein	-	lncRNA	-
ENSMUST00000341282.1	Snhg17-295	416	No protein	-	lncRNA	-