Gene: Amigo1 ENSMUSG00000050947

Description

adhesion molecule with Ig like domain 1 [Source:MGI Symbol;Acc:MGI:2653612]

Location

Chromosome 3: 108,093,651-108,099,602 forward strand.

GRCm39:CM000996.3

About this gene

This gene has 5 transcripts (splice variants), 247 orthologues, 2 paralogues and is associated with 6 phenotypes.

Transcripts

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Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000106656.2	Amigo1-202	5482	492aa	ENSMUSP00000102267.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS17753	Q80ZD8-1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000050909.7	Amigo1-201	5030	492aa	ENSMUSP00000061244.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS17753	Q80ZD8-1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000106659.3	Amigo1-203	1360	309aa	ENSMUSP00000102270.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS71305	Q80ZD8-2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000155782.2	Amigo1-205	697	188aa	ENSMUSP00000142852.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A0G2JEP5	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3, 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSMUST00000106661.4	Amigo1-204	651	206aa	ENSMUSP00000102272.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A2AE38	TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2, 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,