Gene: Tnrc6b ENSMUSG00000047888

Description

trinucleotide repeat containing 6b [Source:MGI Symbol;Acc:MGI:2443730]

Gene Synonyms

2700090M07Rik, A730065C02Rik, D230019K20Rik

Location

Chromosome 15: 80,595,514-80,825,286 forward strand.

GRCm39:CM001008.3

About this gene

This gene has 10 transcripts (splice variants), 291 orthologues, 5 paralogues and is associated with 16 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000067689.9	Tnrc6b-201	17332	1810aa	ENSMUSP00000064336.8	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS37146	Q8BKI2-1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENSMUST00000228124.2	Tnrc6b-208	3407	958aa	ENSMUSP00000154573.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A2I3BRG1	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSMUST00000227449.2	Tnrc6b-205	183	61aa	ENSMUSP00000153748.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A2I3BPE5	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENSMUST00000228071.2	Tnrc6b-207	5215	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-
ENSMUST00000226442.2	Tnrc6b-202	3302	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-
ENSMUST00000226857.2	Tnrc6b-204	3240	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-
ENSMUST00000226461.2	Tnrc6b-203	2053	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-
ENSMUST00000228525.2	Tnrc6b-210	1774	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-
ENSMUST00000227546.2	Tnrc6b-206	620	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-
ENSMUST00000228320.2	Tnrc6b-209	376	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-

Strains

More views of comparative genomics data, such as multiple alignments and synteny, are available on the Location page for this gene.

Gene: Tnrc6b ENSMUSG00000047888

Strains

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Gene: Tnrc6b ENSMUSG00000047888

Strains

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