Gene: Cimap1b ENSMUSG00000047394

Description

ciliary microtubule associated protein 1B [Source:MGI Symbol;Acc:MGI:1917363]

Gene Synonyms

2010001J22Rik, Odf3b

Location

Chromosome 15: 89,261,652-89,263,790 reverse strand.

GRCm39:CM001008.3

About this gene

This gene has 8 transcripts (splice variants), 156 orthologues, 5 paralogues and is associated with 17 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000238996.2	Cimap1b-208	873	254aa	ENSMUSP00000159125.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A5F8MPV5	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSMUST00000049968.9	Cimap1b-201	1040	238aa	ENSMUSP00000053112.8	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS27748	Q5M8M2	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000227834.2	Cimap1b-204	930	163aa	ENSMUSP00000154266.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A2I3BQN6	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000228111.2	Cimap1b-207	287	33aa	ENSMUSP00000154008.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A2I3BQ23	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSMUST00000227854.2	Cimap1b-205	1076	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-
ENSMUST00000228005.2	Cimap1b-206	896	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-
ENSMUST00000226267.2	Cimap1b-202	675	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-
ENSMUST00000227203.2	Cimap1b-203	636	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-