Gene: Satb2 ENSMUSG00000038331

Description

special AT-rich sequence binding protein 2 [Source:MGI Symbol;Acc:MGI:2679336]

Gene Synonyms

BAP002

Location

Chromosome 1: 56,833,140-57,017,809 reverse strand.

GRCm39:CM000994.3

About this gene

This gene has 5 transcripts (splice variants), 264 orthologues, 1 paralogue and is associated with 60 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000114415.10	Satb2-202	5805	733aa	ENSMUSP00000110057.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS14965	Q8VI24-1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000042857.14	Satb2-201	6277	674aa	ENSMUSP00000046067.8	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q8VI24-2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000177424.2	Satb2-205	4694	615aa	ENSMUSP00000135391.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H3BKH3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENSMUST00000177282.2	Satb2-204	454	27aa	ENSMUSP00000135542.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H3BKV4	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3, 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSMUST00000176759.2	Satb2-203	331	104aa	ENSMUSP00000135163.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H3BJX4	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3, 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,