Gene: Ctnna1 ENSMUSG00000037815

Description

catenin alpha 1 [Source:MGI Symbol;Acc:MGI:88274]

Gene Synonyms

2010010M04Rik, Catna1, alpha E catenin, alpha(E)-catenin, catenin (cadherin associated protein), alpha 1

Location

Chromosome 18: 35,251,912-35,387,832 forward strand.

GRCm39:CM001011.3

About this gene

This gene has 11 transcripts (splice variants), 146 orthologues, 5 paralogues and is associated with 21 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000042345.8	Ctnna1-201	3733	906aa	ENSMUSP00000049007.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS29139	P26231 Q545R0	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000236037.2	Ctnna1-204	1453	415aa	ENSMUSP00000157978.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A494BAD0	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSMUST00000235449.2	Ctnna1-203	764	122aa	ENSMUSP00000158398.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A494BBB4	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSMUST00000235269.2	Ctnna1-202	690	62aa	ENSMUSP00000158385.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A494BBA4	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSMUST00000237154.2	Ctnna1-208	519	156aa	ENSMUSP00000158091.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A494BAM5	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSMUST00000237855.2	Ctnna1-210	2542	37aa	ENSMUSP00000157907.2	Nonsense mediated decay		A0A494BA24	-
ENSMUST00000236969.2	Ctnna1-207	1656	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-
ENSMUST00000236571.2	Ctnna1-206	1124	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-
ENSMUST00000238145.2	Ctnna1-211	667	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-
ENSMUST00000236483.2	Ctnna1-205	658	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-
ENSMUST00000237475.2	Ctnna1-209	545	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-