Gene: Ptprm ENSMUSG00000033278

Description

protein tyrosine phosphatase receptor type M [Source:MGI Symbol;Acc:MGI:102694]

Gene Synonyms

RPTPmu

Location

Chromosome 17: 66,973,942-67,661,452 reverse strand.

GRCm39:CM001010.3

About this gene

This gene has 7 transcripts (splice variants), 301 orthologues, 36 paralogues and is associated with 9 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000037974.10	Ptprm-201	5186	1486aa	ENSMUSP00000045603.10	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q68FM4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000223982.2	Ptprm-202	4802	1452aa	ENSMUSP00000153662.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS28948	P28828	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS P3: Where the APPRIS core modules are unable to choose a clear principal variant and there more than one of the variants have distinct CCDS identifiers, APPRIS selects the variant with lowest CCDS identifier as the principal variant. The lower the CCDS identifier, the earlier it was annotated. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P3,
ENSMUST00000224091.2	Ptprm-203	3773	990aa	ENSMUSP00000153463.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A286YDL1	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000224862.2	Ptprm-204	754	160aa	ENSMUSP00000153179.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A286YCW9	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSMUST00000225554.2	Ptprm-206	590	77aa	ENSMUSP00000153042.2	Nonsense mediated decay		A0A286YCL1	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSMUST00000225074.2	Ptprm-205	2713	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-
ENSMUST00000225688.2	Ptprm-207	1674	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-