Gene: Ldhb ENSMUSG00000030246

Description

lactate dehydrogenase B [Source:MGI Symbol;Acc:MGI:96763]

Gene Synonyms

H-Ldh, Ldh-2, lactate dehydrogenase-B

Location

Chromosome 6: 142,435,975-142,453,683 reverse strand.

GRCm39:CM000999.3

About this gene

This gene has 6 transcripts (splice variants), 375 orthologues, 4 paralogues and is associated with 2 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000032373.12	Ldhb-201	1304	334aa	ENSMUSP00000032373.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS20684	P16125	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000239395.2	Ldhb-205	1304	341aa	ENSMUSP00000159378.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A6I8MX27	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000239397.2	Ldhb-206	1287	334aa	ENSMUSP00000159362.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS20684	P16125	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSMUST00000134191.3	Ldhb-203	867	198aa	ENSMUSP00000116014.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		D3Z7F0	TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2, 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSMUST00000204433.3	Ldhb-204	783	193aa	ENSMUSP00000145261.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A0N4SVV8	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3, 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSMUST00000130817.3	Ldhb-202	437	32aa	ENSMUSP00000145467.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A0N4SWC9	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3, 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,