Gene: Nfkb2 ENSMUSG00000025225

Description

nuclear factor of kappa light polypeptide gene enhancer in B cells 2, p49/p100 [Source:MGI Symbol;Acc:MGI:1099800]

Gene Synonyms

NF kappaB2, p52

Location

Chromosome 19: 46,292,759-46,300,824 forward strand.

GRCm39:CM001012.3

About this gene

This gene has 8 transcripts (splice variants), 124 orthologues, 4 paralogues and is associated with 125 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000111881.4	Nfkb2-202	3141	899aa	ENSMUSP00000107512.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS29874	Q3UG25 Q9WTK5	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000237330.2	Nfkb2-206	3846	878aa	ENSMUSP00000157809.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A494B9Y5	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000236591.2	Nfkb2-204	3132	899aa	ENSMUSP00000157542.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS29874	Q3UG25 Q9WTK5	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSMUST00000073116.13	Nfkb2-201	2979	899aa	ENSMUSP00000072859.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS29874	Q3UG25 Q9WTK5	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000237791.2	Nfkb2-208	2636	776aa	ENSMUSP00000158143.2	Nonsense mediated decay		A0A494BAQ2	-
ENSMUST00000235868.2	Nfkb2-203	384	No protein	-	Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined		-	-
ENSMUST00000237761.2	Nfkb2-207	2837	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-
ENSMUST00000236820.2	Nfkb2-205	2827	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-

Strains

More views of comparative genomics data, such as multiple alignments and synteny, are available on the Location page for this gene.

Gene: Nfkb2 ENSMUSG00000025225

Strains

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Gene: Nfkb2 ENSMUSG00000025225

Strains

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