Gene: Hspa12a ENSMUSG00000025092

Description

heat shock protein 12A [Source:MGI Symbol;Acc:MGI:1920692]

Gene Synonyms

1700063D12Rik, Gm19925, Hspa12a

Location

Chromosome 19: 58,784,182-58,932,086 reverse strand.

GRCm39:CM001012.3

About this gene

This gene has 10 transcripts (splice variants), 205 orthologues, 4 paralogues and is associated with 9 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000066285.6	Hspa12a-201	5734	675aa	ENSMUSP00000066860.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS38032	Q8K0U4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000235263.2	Hspa12a-202	1400	222aa	ENSMUSP00000158098.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A494BAN0	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000237297.2	Hspa12a-208	877	227aa	ENSMUSP00000157441.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A494B917	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSMUST00000238055.2	Hspa12a-210	596	199aa	ENSMUSP00000158170.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A494BAN9	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENSMUST00000235791.2	Hspa12a-204	861	No protein	-	Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined		-	-
ENSMUST00000235662.2	Hspa12a-203	754	No protein	-	Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined		-	-
ENSMUST00000237786.2	Hspa12a-209	612	No protein	-	Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined		-	-
ENSMUST00000236839.2	Hspa12a-207	377	No protein	-	Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined		-	-
ENSMUST00000236429.2	Hspa12a-205	1510	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-
ENSMUST00000236453.2	Hspa12a-206	748	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-