Gene: Tfcp2 ENSMUSG00000009733

Description

transcription factor CP2 [Source:MGI Symbol;Acc:MGI:98509]

Gene Synonyms

CP-2, CP2, D230015P20Rik, LBP-1c, LBP-1d, LBP1, LSF, Tcfcp2, UBP-1

Location

Chromosome 15: 100,395,893-100,449,889 reverse strand.

GRCm39:CM001008.3

About this gene

This gene has 9 transcripts (splice variants), 216 orthologues, 5 paralogues and is associated with 1 phenotype.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000229696.2	Tfcp2-204	3302	502aa	ENSMUSP00000155683.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS27840	Q9ERA0-1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSMUST00000009877.8	Tfcp2-201	3220	500aa	ENSMUSP00000009877.8	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q9ERA0-3	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000229581.2	Tfcp2-203	1903	505aa	ENSMUSP00000155581.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A2R8VKI7	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000231174.2	Tfcp2-209	521	153aa	ENSMUSP00000155598.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A2R8VHZ4	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSMUST00000229265.2	Tfcp2-202	485	41aa	ENSMUSP00000155770.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A2R8VI61	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSMUST00000231138.2	Tfcp2-208	371	40aa	ENSMUSP00000155196.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A2R8VHK8	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSMUST00000230254.2	Tfcp2-206	2720	No protein	-	Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined		-	-
ENSMUST00000230039.2	Tfcp2-205	2173	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-
ENSMUST00000230363.2	Tfcp2-207	586	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-