Gene: Def6 ENSMUSG00000002257

Description

differentially expressed in FDCP 6 [Source:MGI Symbol;Acc:MGI:1346328]

Gene Synonyms

2410003F05Rik, 6430538D02Rik, IBP, IRF-4-binding protein, SLAT

Location

Chromosome 17: 28,426,752-28,447,582 forward strand.

GRCm39:CM001010.3

About this gene

This gene has 8 transcripts (splice variants), 225 orthologues, 2 paralogues and is associated with 11 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000002327.6	Def6-201	2277	630aa	ENSMUSP00000002327.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS28574	A0A0R4IZX1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000233264.2	Def6-205	1155	385aa	ENSMUSP00000156702.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A3B2W417	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENSMUST00000233170.2	Def6-203	774	257aa	ENSMUSP00000156601.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q8C2K1-2	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENSMUST00000233560.2	Def6-207	581	180aa	ENSMUSP00000156873.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A3B2W860	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSMUST00000233958.2	Def6-208	432	56aa	ENSMUSP00000156736.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A3B2WCX4	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSMUST00000233534.2	Def6-206	385	129aa	ENSMUSP00000156804.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A3B2W486	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENSMUST00000233205.2	Def6-204	445	No protein	-	Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined		-	-
ENSMUST00000146724.2	Def6-202	349	No protein	-	Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined		-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,