Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: Cntn1 MGP_CAROLIEiJ_G0020187

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Description

contactin 1 [Source:MGI Symbol;Acc:MGI:105980]

Location

Chromosome 15: 85,895,841-86,189,547 forward strand.

CAROLI_EIJ_v1.1:LT608239.1

About this gene

This gene has 4 transcripts (splice variants), 204 orthologues and 35 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
MGP_CAROLIEiJ_T0039545.1	Cntn1-202	5665	1020aa	MGP_CAROLIEiJ_P0039545	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A6P5R2T1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
MGP_CAROLIEiJ_T0039546.1	Cntn1-203	5646	1020aa	MGP_CAROLIEiJ_P0039546	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A6P5R2T1	-
MGP_CAROLIEiJ_T0039547.1	Cntn1-204	3969	1020aa	MGP_CAROLIEiJ_P0039547	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A6P5R2T1	-
MGP_CAROLIEiJ_T0039544.1	Cntn1-201	4537	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

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Paralogues

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