Transcript: ENST00000435324.4 NPIPB7-201

Description

nuclear pore complex interacting protein family member B7 [Source:HGNC Symbol;Acc:HGNC:33832]

Gene Synonyms

LOC440350, NPIPL1

Location

Chromosome 16: 28,456,424-28,471,174 reverse strand.

About this transcript

This transcript has 7 exons, is annotated with 13 domains and features, is associated with 7930 variant alleles and maps to 2125 oligo probes.

Gene

This transcript is a product of gene ENSG00000233232.8 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq Match	Flags
ENST00000452313.6	NPIPB7-202	3238	414aa	ENSP00000405348.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS92130	O75200	NM_001396030.1	The Matched Annotation from NCBI and EMBL-EBI is a collaboration between Ensembl/GENCODE and RefSeq. The MANE Select is a default transcript per human gene that is representative of biology, well-supported, expressed and highly-conserved. This transcript set matches GRCh38 and is 100% identical between RefSeq and Ensembl/GENCODE for 5' UTR, CDS, splicing and 3'UTR.MANE Select, A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENST00000652214.1	NPIPB7-203	1320	353aa	ENSP00000499219.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A494C1T1	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000435324.4	NPIPB7-201	1265	421aa	ENSP00000415207.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding		I3L0I5	-	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5, 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,

Summary

Statistics

Exons: 7, Coding exons: 7, Transcript length: 1,265 bps, Translation length: 421 residues

Transcript Support Level (TSL)

TSL:5

Incomplete CDS

5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete

Version

ENST00000435324.4

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Transcript: ENST00000435324.4 NPIPB7-201

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Transcript: ENST00000435324.4 NPIPB7-201

Summary

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