Transcript: ENST00000263116.8 RAB36-201

Description

RAB36, member RAS oncogene family [Source:HGNC Symbol;Acc:HGNC:9775]

Location

Chromosome 22: 23,145,477-23,165,663 forward strand.

About this transcript

This transcript has 11 exons, is annotated with 20 domains and features, is associated with 9075 variant alleles and maps to 543 oligo probes.

Gene

This transcript is a product of gene ENSG00000100228.14 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq Match	Flags
ENST00000263116.8	RAB36-201	4990	267aa	ENSP00000263116.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS13805	O95755	NM_004914.5	The Matched Annotation from NCBI and EMBL-EBI is a collaboration between Ensembl/GENCODE and RefSeq. The MANE Select is a default transcript per human gene that is representative of biology, well-supported, expressed and highly-conserved. This transcript set matches GRCh38 and is 100% identical between RefSeq and Ensembl/GENCODE for 5' UTR, CDS, splicing and 3'UTR.MANE Select, A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENST00000341989.9	RAB36-202	936	245aa	ENSP00000343494.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding		O95755	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENST00000420895.1	RAB36-203	554	132aa	ENSP00000397594.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H7C0Z1	-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3, 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,

Summary

Statistics

Exons: 11, Coding exons: 10, Transcript length: 4,990 bps, Translation length: 267 residues

MANE

This MANE Select transcript contains ENSP00000263116 and matches to NM_004914.5 and NP_004905.3

Uniprot

This transcript corresponds to the following Uniprot identifiers: O95755

CCDS

This transcript is a member of the Human CCDS set: CCDS13805

Transcript Support Level (TSL)

TSL:1

Version

ENST00000263116.8

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Annotation Attributes

upstream ATG [Definitions]

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENST00000263116.8 RAB36-201

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Transcript: ENST00000263116.8 RAB36-201

Summary

About Us

Get help

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