Human (GRCh38.p14)
Description

ubiquitin specific peptidase 39 [Source:HGNC Symbol;Acc:HGNC:20071]

Gene Synonyms

CGI-21, SAD1, SNRNP65

Location
About this transcript

This transcript has 14 exons, is annotated with 40 domains and features, is associated with 15498 variant alleles and maps to 528 oligo probes.

Transcript IDNamebpProteinTranslation IDBiotypeCCDSUniProt MatchRefSeq MatchFlags
ENST00000323701.11USP39-2012183565aaENSP00000312981.6
 
Protein coding
CCDS33234Q53GS9-1 NM_006590.4MANE SelectEnsembl CanonicalGENCODE PrimaryGENCODE BasicAPPRIS P3TSL:1
ENST00000860350.1USP39-2222283592aaENSP00000530409.1
 
Protein coding
--GENCODE Basic
ENST00000916017.1USP39-2272225564aaENSP00000586076.1
 
Protein coding
--GENCODE PrimaryGENCODE BasicAPPRIS ALT1
ENST00000916018.1USP39-2282194564aaENSP00000586077.1
 
Protein coding
--GENCODE PrimaryGENCODE BasicAPPRIS ALT1
ENST00000613444.4USP39-2202161487aaENSP00000484024.1
 
Protein coding
CCDS74534A0A087X1B2 -GENCODE BasicTSL:2
ENST00000860352.1USP39-2242108540aaENSP00000530411.1
 
Protein coding
--GENCODE PrimaryGENCODE Basic
ENST00000860354.1USP39-2262102539aaENSP00000530413.1
 
Protein coding
--GENCODE Basic
ENST00000860351.1USP39-2232090531aaENSP00000530410.1
 
Protein coding
--GENCODE PrimaryGENCODE Basic
ENST00000450066.6USP39-2072086462aaENSP00000396133.2
 
Protein coding
CCDS58716Q53GS9-2 -GENCODE BasicTSL:2
ENST00000946314.1USP39-2292046517aaENSP00000616373.1
 
Protein coding
--GENCODE Basic
ENST00000409470.5USP39-2032034565aaENSP00000386864.1
 
Protein coding
CCDS33234Q53GS9-1 -GENCODE PrimaryGENCODE BasicAPPRIS P3TSL:1
ENST00000409766.7USP39-2042033488aaENSP00000386803.3
 
Protein coding
CCDS58717Q53GS9-3 -GENCODE BasicTSL:2
ENST00000860353.1USP39-2252029514aaENSP00000530412.1
 
Protein coding
--GENCODE Basic
ENST00000860349.1USP39-2211975565aaENSP00000530408.1
 
Protein coding
CCDS33234--GENCODE BasicAPPRIS P3
ENST00000409025.5USP39-2021946536aaENSP00000386572.1
 
Protein coding
B9A018 -GENCODE BasicTSL:5
ENST00000448971.5USP39-206610129aaENSP00000396854.1
 
Protein coding
C9JIU2 -TSL:3CDS 3' incomplete
ENST00000442708.5USP39-205561113aaENSP00000392911.1
 
Protein coding
C9J0X5 -TSL:4CDS 3' incomplete
ENST00000458268.5USP39-209751154aaENSP00000400690.1
 
Nonsense mediated decay
F8WC91 -TSL:4
ENST00000467885.6USP39-21333861aaENSP00000479885.1
 
Nonsense mediated decay
A0A087WW31 -TSL:5CDS 5' incomplete
ENST00000459775.5USP39-2102148No protein-
 
Protein coding CDS not defined
--TSL:2
ENST00000490193.5USP39-2161028No protein-
 
Protein coding CDS not defined
--TSL:5
ENST00000465514.1USP39-212660No protein-
 
Protein coding CDS not defined
--TSL:3
ENST00000491659.5USP39-217648No protein-
 
Protein coding CDS not defined
--TSL:3
ENST00000455732.5USP39-208623No protein-
 
Protein coding CDS not defined
--TSL:3
ENST00000465282.5USP39-211568No protein-
 
Protein coding CDS not defined
--TSL:4
ENST00000496047.5USP39-219554No protein-
 
Protein coding CDS not defined
--TSL:3
ENST00000481409.1USP39-215447No protein-
 
Protein coding CDS not defined
--TSL:3
ENST00000474572.6USP39-214293No protein-
 
Protein coding CDS not defined
--TSL:4
ENST00000493829.5USP39-2181660No protein-
 
Retained intron
--TSL:2
Statistics

Exons: 14, Coding exons: 13, Transcript length: 2,034 bps, Translation length: 565 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q53GS9

CCDS

This transcript is a member of the Human CCDS set: CCDS33234

Transcript Support Level (TSL)

TSL:1

Version

ENST00000409470.5

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

GENCODE primary gene

This transcript is a member of the Gencode Primary gene set.