Transcript: ENST00000576448.1 LRRC59-203

Description

leucine rich repeat containing 59 [Source:HGNC Symbol;Acc:HGNC:28817]

Gene Synonyms

FLJ21675, PRO1855

Location

Chromosome 17: 50,395,974-50,397,504 reverse strand.

About this transcript

This transcript has 1 exon, is annotated with 1 domain and feature, is associated with 752 variant alleles and maps to 128 oligo probes.

Gene

This transcript is a product of gene ENSG00000108829.10 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq Match	Flags
ENST00000225972.8	LRRC59-201	2880	307aa	ENSP00000225972.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS11566	Q96AG4	NM_018509.4	The Matched Annotation from NCBI and EMBL-EBI is a collaboration between Ensembl/GENCODE and RefSeq. The MANE Select is a default transcript per human gene that is representative of biology, well-supported, expressed and highly-conserved. This transcript set matches GRCh38 and is 100% identical between RefSeq and Ensembl/GENCODE for 5' UTR, CDS, splicing and 3'UTR.MANE Select, A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENST00000576448.1	LRRC59-203	1531	62aa	ENSP00000459305.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		I3L223	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, TSL NA: A transcript that was not analysed for TSL. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:NA,
ENST00000503118.2	LRRC59-202	438	57aa	ENSP00000459616.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		I3L2E8	-	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5, 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,

Summary

Statistics

Exons: 1, Coding exons: 1, Transcript length: 1,531 bps, Translation length: 62 residues

Transcript Support Level (TSL)

TSL:NA

Version

ENST00000576448.1

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENST00000576448.1 LRRC59-203

Summary

About Us

Get help

Our sister sites

Follow us

Favourite species

All species

Recent locations

Transcript: ENST00000576448.1 LRRC59-203

Summary

About Us

Get help

Our sister sites

Follow us