Transcript: ENST00000437070.1 RNF168-202

Description

ring finger protein 168 [Source:HGNC Symbol;Acc:HGNC:26661]

Gene Synonyms

FLJ35794

Location

Chromosome 3: 196,471,760-196,503,677 reverse strand.

About this transcript

This transcript has 5 exons, is annotated with 1 domain and feature, is associated with 16150 variant alleles and maps to 297 oligo probes.

Gene

This transcript is a product of gene ENSG00000163961.4 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq Match	Flags
ENST00000318037.3	RNF168-201	5347	571aa	ENSP00000320898.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS3317	Q8IYW5	NM_152617.4	The Matched Annotation from NCBI and EMBL-EBI is a collaboration between Ensembl/GENCODE and RefSeq. The MANE Select is a default transcript per human gene that is representative of biology, well-supported, expressed and highly-conserved. This transcript set matches GRCh38 and is 100% identical between RefSeq and Ensembl/GENCODE for 5' UTR, CDS, splicing and 3'UTR.MANE Select, A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENST00000437070.1	RNF168-202	2202	116aa	ENSP00000396712.1	Nonsense mediated decay		F8WD60	-	TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,

Summary

Statistics

Exons: 5, Coding exons: 2, Transcript length: 2,202 bps, Translation length: 116 residues

Transcript Support Level (TSL)

TSL:2

Version

ENST00000437070.1

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENST00000437070.1 RNF168-202

Summary

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Transcript: ENST00000437070.1 RNF168-202

Summary

About Us

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