Transcript: ENST00000351008.4 SPATA16-201

Description

spermatogenesis associated 16 [Source:HGNC Symbol;Acc:HGNC:29935]

Gene Synonyms

NYD-SP12

Location

Chromosome 3: 172,889,357-173,141,235 reverse strand.

About this transcript

This transcript has 11 exons, is annotated with 7 domains and features, is associated with 100076 variant alleles and maps to 439 oligo probes.

Gene

This transcript is a product of gene ENSG00000144962.7 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq Match	Flags
ENST00000351008.4	SPATA16-201	2074	569aa	ENSP00000341765.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS3221	A0A140VJV8 Q9BXB7	NM_031955.6	The Matched Annotation from NCBI and EMBL-EBI is a collaboration between Ensembl/GENCODE and RefSeq. The MANE Select is a default transcript per human gene that is representative of biology, well-supported, expressed and highly-conserved. This transcript set matches GRCh38 and is 100% identical between RefSeq and Ensembl/GENCODE for 5' UTR, CDS, splicing and 3'UTR.MANE Select, A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENST00000652082.1	SPATA16-202	1124	214aa	ENSP00000498213.1	Nonsense mediated decay		A0A494BZR9	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,

Summary

Statistics

Exons: 11, Coding exons: 10, Transcript length: 2,074 bps, Translation length: 569 residues

MANE

This MANE Select transcript contains ENSP00000341765 and matches to NM_031955.6 and NP_114161.3

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q9BXB7

CCDS

This transcript is a member of the Human CCDS set: CCDS3221

Transcript Support Level (TSL)

TSL:1

Version

ENST00000351008.4

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Annotation Attributes

CAGE supported TSS [Definitions]

LR annotation

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

GENCODE primary gene

This transcript is a member of the Gencode Primary gene set.

Transcript: ENST00000351008.4 SPATA16-201

Summary

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Transcript: ENST00000351008.4 SPATA16-201

Summary

About Us

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