Transcript: ENST00000301480.5 ZNF560-201

Description

zinc finger protein 560 [Source:HGNC Symbol;Acc:HGNC:26484]

Gene Synonyms

FLJ31986

Location

Chromosome 19: 9,466,355-9,498,616 reverse strand.

About this transcript

This transcript has 10 exons, is annotated with 95 domains and features, is associated with 15727 variant alleles and maps to 330 oligo probes.

Gene

This transcript is a product of gene ENSG00000198028.4 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq Match	Flags
ENST00000301480.5	ZNF560-201	2815	790aa	ENSP00000301480.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS12214	Q96MR9	NM_152476.3	The Matched Annotation from NCBI and EMBL-EBI is a collaboration between Ensembl/GENCODE and RefSeq. The MANE Select is a default transcript per human gene that is representative of biology, well-supported, expressed and highly-conserved. This transcript set matches GRCh38 and is 100% identical between RefSeq and Ensembl/GENCODE for 5' UTR, CDS, splicing and 3'UTR.MANE Select, A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENST00000585974.1	ZNF560-202	516	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,

Summary

Statistics

Exons: 10, Coding exons: 8, Transcript length: 2,815 bps, Translation length: 790 residues

MANE

This MANE Select transcript contains ENSP00000301480 and matches to NM_152476.3 and NP_689689.2

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q96MR9

CCDS

This transcript is a member of the Human CCDS set: CCDS12214

Transcript Support Level (TSL)

TSL:1

Version

ENST00000301480.5

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

GENCODE primary gene

This transcript is a member of the Gencode Primary gene set.

Transcript: ENST00000301480.5 ZNF560-201

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Transcript: ENST00000301480.5 ZNF560-201

Summary

About Us

Get help

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