Transcript: ENST00000644383.1 RABGGTA-225

Description

Rab geranylgeranyltransferase subunit alpha [Source:HGNC Symbol;Acc:HGNC:9795]

Gene Synonyms

PTAR3

Location

Scaffold HG1_PATCH: 566,516-572,577 reverse strand.

About this transcript

This transcript has 16 exons, is annotated with 23 domains and features, is associated with 3172 variant alleles and maps to 665 oligo probes.

Gene

This transcript is a product of gene ENSG00000285193.1 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	RefSeq Match	Flags
ENST00000644383.1	RABGGTA-225	2265	567aa	ENSP00000494636.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q92696	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000646658.1	RABGGTA-237	2088	567aa	ENSP00000496595.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q92696	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000644705.1	RABGGTA-226	1197	176aa	ENSP00000495251.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	H0YLG7	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000645472.1	RABGGTA-232	680	175aa	ENSP00000494366.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	H0YMG5	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000645404.1	RABGGTA-231	1963	424aa	ENSP00000494691.1	Nonsense mediated decay	H0YLH3	-	-
ENST00000647538.1	RABGGTA-242	1883	424aa	ENSP00000494093.1	Nonsense mediated decay	H0YLH3	-	-
ENST00000647077.1	RABGGTA-240	704	136aa	ENSP00000493910.1	Nonsense mediated decay	H0YKZ8	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000646798.1	RABGGTA-239	573	73aa	ENSP00000493879.1	Nonsense mediated decay	H0YKP6	-	-
ENST00000646195.1	RABGGTA-235	889	No protein	-	Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined	-	-	-
ENST00000646794.1	RABGGTA-238	886	No protein	-	Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined	-	-	-
ENST00000642788.1	RABGGTA-222	877	No protein	-	Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined	-	-	-
ENST00000647181.1	RABGGTA-241	753	No protein	-	Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined	-	-	-
ENST00000645830.1	RABGGTA-233	570	No protein	-	Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined	-	-	-
ENST00000645202.1	RABGGTA-230	2060	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-	-
ENST00000643998.1	RABGGTA-223	1997	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-	-
ENST00000644940.1	RABGGTA-227	1329	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-	-
ENST00000645841.1	RABGGTA-234	768	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-	-
ENST00000645110.1	RABGGTA-229	735	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-	-
ENST00000644941.1	RABGGTA-228	678	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-	-
ENST00000644156.1	RABGGTA-224	648	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-	-
ENST00000646336.1	RABGGTA-236	534	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-	-

Summary

Statistics

Exons: 16, Coding exons: 16, Transcript length: 2,265 bps, Translation length: 567 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q92696

Version

ENST00000644383.1

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Annotation Attributes

alternative 5' UTR [Definitions]

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

GENCODE primary gene

This transcript is a member of the Gencode Primary gene set.

Transcript: ENST00000644383.1 RABGGTA-225

Summary

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Transcript: ENST00000644383.1 RABGGTA-225

Summary

About Us

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