Transcript: ENST00000642787.1 SLC9C1-207

Description

solute carrier family 9 member C1 [Source:HGNC Symbol;Acc:HGNC:31401]

Gene Synonyms

NHE, SLC9A10

Location

Scaffold HSCHR3_6_CTG2_1: 170,443-186,965 reverse strand.

About this transcript

This transcript has 4 exons, is annotated with 10 domains and features and maps to 89 oligo probes.

Gene

This transcript is a product of gene ENSG00000285044.2 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	RefSeq Match	Flags
ENST00000642317.2	SLC9C1-206	4119	1177aa	ENSP00000495147.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q4G0N8-1	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000647463.1	SLC9C1-210	3979	1129aa	ENSP00000495048.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q4G0N8-2	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000642787.1	SLC9C1-207	521	85aa	ENSP00000496221.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	C9J3M6	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000644496.1	SLC9C1-209	2733	241aa	ENSP00000494242.1	Nonsense mediated decay	F8WCJ0	-	-
ENST00000643172.2	SLC9C1-208	901	64aa	ENSP00000518750.1	Nonsense mediated decay	A0AAA9YHL5	-	-

Summary

Statistics

Exons: 4, Coding exons: 2, Transcript length: 521 bps, Translation length: 85 residues

Incomplete CDS

3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete

Version

ENST00000642787.1

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENST00000642787.1 SLC9C1-207

Summary

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Transcript: ENST00000642787.1 SLC9C1-207

Summary

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