Transcript: ENST00000659009.1 LINC01727-210

Description

long intergenic non-protein coding RNA 1727 [Source:HGNC Symbol;Acc:HGNC:52515]

Gene Synonyms

IRENA

Location

Chromosome 20: 21,570,006-21,666,479 forward strand.

About this transcript

This transcript has 5 exons and maps to 118 oligo probes.

Gene

This transcript is a product of gene ENSG00000279082.6 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	RefSeq Match	Flags
ENST00000749957.1	LINC01727-225	1218	No protein	-	lncRNA	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000663538.2	LINC01727-212	4592	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000653966.3	LINC01727-206	2564	No protein	-	lncRNA	-	-
ENST00000749959.1	LINC01727-226	2464	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000666232.1	LINC01727-214	1995	No protein	-	lncRNA	-	-
ENST00000749960.1	LINC01727-227	1902	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000749970.1	LINC01727-237	1893	No protein	-	lncRNA	-	-
ENST00000749971.1	LINC01727-238	1741	No protein	-	lncRNA	-	-
ENST00000665084.3	LINC01727-213	1732	No protein	-	lncRNA	-	-
ENST00000654700.2	LINC01727-207	1687	No protein	-	lncRNA	-	-
ENST00000749963.1	LINC01727-230	1678	No protein	-	lncRNA	-	-
ENST00000687963.1	LINC01727-220	1614	No protein	-	lncRNA	-	-
ENST00000749964.1	LINC01727-231	1605	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000749965.1	LINC01727-232	1551	No protein	-	lncRNA	-	-
ENST00000749961.1	LINC01727-228	1541	No protein	-	lncRNA	-	-
ENST00000749974.1	LINC01727-241	1539	No protein	-	lncRNA	-	-
ENST00000668638.2	LINC01727-216	1534	No protein	-	lncRNA	-	-
ENST00000749972.1	LINC01727-239	1529	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000668557.2	LINC01727-215	1516	No protein	-	lncRNA	-	-
ENST00000685162.2	LINC01727-219	1510	No protein	-	lncRNA	-	-
ENST00000749962.1	LINC01727-229	1437	No protein	-	lncRNA	-	-
ENST00000659009.1	LINC01727-210	1427	No protein	-	lncRNA	-	-
ENST00000749973.1	LINC01727-240	1427	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000691139.1	LINC01727-224	1405	No protein	-	lncRNA	-	-
ENST00000689133.1	LINC01727-222	1402	No protein	-	lncRNA	-	-
ENST00000749968.1	LINC01727-235	1392	No protein	-	lncRNA	-	-
ENST00000749966.1	LINC01727-233	1376	No protein	-	lncRNA	-	-
ENST00000749983.1	LINC01727-250	1374	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000623256.4	LINC01727-202	1339	No protein	-	lncRNA	-	TSL 4: A transcript where the best supporting EST is flagged as suspect The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:4,
ENST00000661947.3	LINC01727-211	1333	No protein	-	lncRNA	-	-
ENST00000749967.1	LINC01727-234	1312	No protein	-	lncRNA	-	-
ENST00000655574.1	LINC01727-209	1290	No protein	-	lncRNA	-	-
ENST00000690359.2	LINC01727-223	1233	No protein	-	lncRNA	-	-
ENST00000624367.4	LINC01727-203	1196	No protein	-	lncRNA	-	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENST00000688170.2	LINC01727-221	1191	No protein	-	lncRNA	-	-
ENST00000669771.1	LINC01727-218	1176	No protein	-	lncRNA	-	-
ENST00000749975.1	LINC01727-242	1171	No protein	-	lncRNA	-	-
ENST00000749976.1	LINC01727-243	1164	No protein	-	lncRNA	-	-
ENST00000655015.1	LINC01727-208	1159	No protein	-	lncRNA	-	-
ENST00000749977.1	LINC01727-244	1144	No protein	-	lncRNA	-	-
ENST00000668797.1	LINC01727-217	1109	No protein	-	lncRNA	-	-
ENST00000749987.1	LINC01727-254	1053	No protein	-	lncRNA	-	-
ENST00000653224.1	LINC01727-205	1053	No protein	-	lncRNA	-	-
ENST00000749985.1	LINC01727-252	1004	No protein	-	lncRNA	-	-
ENST00000749980.1	LINC01727-247	997	No protein	-	lncRNA	-	-
ENST00000749986.1	LINC01727-253	971	No protein	-	lncRNA	-	-
ENST00000624385.1	LINC01727-204	940	No protein	-	lncRNA	-	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENST00000749969.1	LINC01727-236	875	No protein	-	lncRNA	-	-
ENST00000622928.4	LINC01727-201	830	No protein	-	lncRNA	-	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENST00000749981.1	LINC01727-248	816	No protein	-	lncRNA	-	-
ENST00000749982.1	LINC01727-249	786	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000749978.1	LINC01727-245	726	No protein	-	lncRNA	-	-
ENST00000749979.1	LINC01727-246	590	No protein	-	lncRNA	-	-
ENST00000749984.1	LINC01727-251	467	No protein	-	lncRNA	-	-
ENST00000749988.1	LINC01727-255	439	No protein	-	lncRNA	-	-

Summary

Statistics

Exons: 5, Coding exons: 0, Transcript length: 1,427 bps,

Version

ENST00000659009.1

Type

LncRNA

Annotation Method

Transcript which was created by the HAVANA-Ensembl manually supervised computational pipeline (TAGENE) for long-read sequence data.

Transcript: ENST00000659009.1 LINC01727-210

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Transcript: ENST00000659009.1 LINC01727-210

Summary

About Us

Get help

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