Transcript: ENST00000578278.6 LINC00668-201

Description

long intergenic non-protein coding RNA 668 [Source:HGNC Symbol;Acc:HGNC:44328]

Location

Chromosome 18: 6,925,477-6,929,994 reverse strand.

About this transcript

This transcript has 6 exons and maps to 244 oligo probes.

Gene

This transcript is a product of gene ENSG00000265933.6 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	RefSeq Match	Flags
ENST00000581725.5	LINC00668-206	1902	No protein	-	lncRNA	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENST00000580197.6	LINC00668-204	2631	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENST00000773089.1	LINC00668-219	2491	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000583840.2	LINC00668-208	2252	No protein	-	lncRNA	-	TSL NA: A transcript that was not analysed for TSL. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:NA,
ENST00000773093.1	LINC00668-223	1811	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000581571.5	LINC00668-205	1748	No protein	-	lncRNA	-	TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENST00000773087.1	LINC00668-217	1738	No protein	-	lncRNA	-	-
ENST00000773090.1	LINC00668-220	1722	No protein	-	lncRNA	-	-
ENST00000773092.1	LINC00668-222	1660	No protein	-	lncRNA	-	-
ENST00000578497.6	LINC00668-202	1612	No protein	-	lncRNA	-	TSL 4: A transcript where the best supporting EST is flagged as suspect The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:4,
ENST00000578278.6	LINC00668-201	1584	No protein	-	lncRNA	-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENST00000773116.1	LINC00668-246	1521	No protein	-	lncRNA	-	-
ENST00000773104.1	LINC00668-234	1367	No protein	-	lncRNA	-	-
ENST00000773085.1	LINC00668-215	1363	No protein	-	lncRNA	-	-
ENST00000773097.1	LINC00668-227	1359	No protein	-	lncRNA	-	-
ENST00000773114.1	LINC00668-244	1035	No protein	-	lncRNA	-	-
ENST00000773113.1	LINC00668-243	919	No protein	-	lncRNA	-	-
ENST00000773111.1	LINC00668-241	856	No protein	-	lncRNA	-	-
ENST00000773115.1	LINC00668-245	856	No protein	-	lncRNA	-	-
ENST00000773112.1	LINC00668-242	847	No protein	-	lncRNA	-	-
ENST00000773095.1	LINC00668-225	814	No protein	-	lncRNA	-	-
ENST00000583316.6	LINC00668-207	777	No protein	-	lncRNA	-	TSL 4: A transcript where the best supporting EST is flagged as suspect The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:4,
ENST00000773086.1	LINC00668-216	764	No protein	-	lncRNA	-	-
ENST00000773091.1	LINC00668-221	735	No protein	-	lncRNA	-	-
ENST00000773094.1	LINC00668-224	724	No protein	-	lncRNA	-	-
ENST00000773101.1	LINC00668-231	716	No protein	-	lncRNA	-	-
ENST00000773083.1	LINC00668-213	705	No protein	-	lncRNA	-	-
ENST00000773099.1	LINC00668-229	703	No protein	-	lncRNA	-	-
ENST00000773119.1	LINC00668-249	698	No protein	-	lncRNA	-	-
ENST00000773082.1	LINC00668-212	688	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000773080.1	LINC00668-210	687	No protein	-	lncRNA	-	-
ENST00000773096.1	LINC00668-226	679	No protein	-	lncRNA	-	-
ENST00000773088.1	LINC00668-218	676	No protein	-	lncRNA	-	-
ENST00000773103.1	LINC00668-233	669	No protein	-	lncRNA	-	-
ENST00000773098.1	LINC00668-228	656	No protein	-	lncRNA	-	-
ENST00000773100.1	LINC00668-230	652	No protein	-	lncRNA	-	-
ENST00000773102.1	LINC00668-232	646	No protein	-	lncRNA	-	-
ENST00000773084.1	LINC00668-214	641	No protein	-	lncRNA	-	-
ENST00000773118.1	LINC00668-248	633	No protein	-	lncRNA	-	-
ENST00000773081.1	LINC00668-211	621	No protein	-	lncRNA	-	-
ENST00000773079.1	LINC00668-209	612	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000579012.1	LINC00668-203	605	No protein	-	lncRNA	-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENST00000773120.1	LINC00668-250	579	No protein	-	lncRNA	-	-
ENST00000773105.1	LINC00668-235	554	No protein	-	lncRNA	-	-
ENST00000773107.1	LINC00668-237	553	No protein	-	lncRNA	-	-
ENST00000773108.1	LINC00668-238	551	No protein	-	lncRNA	-	-
ENST00000773117.1	LINC00668-247	548	No protein	-	lncRNA	-	-
ENST00000773121.1	LINC00668-251	534	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000773122.1	LINC00668-252	505	No protein	-	lncRNA	-	-
ENST00000773109.1	LINC00668-239	485	No protein	-	lncRNA	-	-
ENST00000773106.1	LINC00668-236	480	No protein	-	lncRNA	-	-
ENST00000773110.1	LINC00668-240	438	No protein	-	lncRNA	-	-

Summary

Statistics

Exons: 6, Coding exons: 0, Transcript length: 1,584 bps,

Transcript Support Level (TSL)

TSL:3

Version

ENST00000578278.6

Type

LncRNA

Annotation Method

Transcript which was created by the HAVANA-Ensembl manually supervised computational pipeline (TAGENE) for long-read sequence data.

Transcript: ENST00000578278.6 LINC00668-201

Summary

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Transcript: ENST00000578278.6 LINC00668-201

Summary

About Us

Get help

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