Transcript: ENST00000648108.1 LINC01569-205

Description

long intergenic non-protein coding RNA 1569 [Source:HGNC Symbol;Acc:HGNC:51380]

Gene Synonyms

TCONS_00024567

Location

Chromosome 16: 4,246,027-4,252,322 reverse strand.

About this transcript

This transcript has 3 exons and maps to 232 oligo probes.

Gene

This transcript is a product of gene ENSG00000262468.9 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	RefSeq Match	Flags
ENST00000649264.2	LINC01569-207	3998	No protein	-	lncRNA	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary,
ENST00000573042.2	LINC01569-202	1903	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENST00000648108.1	LINC01569-205	1903	No protein	-	lncRNA	-	-
ENST00000687603.2	LINC01569-211	1887	No protein	-	lncRNA	-	-
ENST00000732302.1	LINC01569-228	1693	No protein	-	lncRNA	-	-
ENST00000571970.6	LINC01569-201	1469	No protein	-	lncRNA	-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENST00000685215.2	LINC01569-209	1373	No protein	-	lncRNA	-	-
ENST00000687438.2	LINC01569-210	1344	No protein	-	lncRNA	-	-
ENST00000732295.1	LINC01569-221	1306	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000650502.1	LINC01569-208	1243	No protein	-	lncRNA	-	-
ENST00000690276.2	LINC01569-213	1210	No protein	-	lncRNA	-	-
ENST00000732304.1	LINC01569-230	1209	No protein	-	lncRNA	-	-
ENST00000689983.2	LINC01569-212	1193	No protein	-	lncRNA	-	-
ENST00000732297.1	LINC01569-223	1151	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000701038.2	LINC01569-214	1132	No protein	-	lncRNA	-	-
ENST00000732292.1	LINC01569-218	1119	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000648010.3	LINC01569-204	1111	No protein	-	lncRNA	-	-
ENST00000701646.2	LINC01569-215	1088	No protein	-	lncRNA	-	-
ENST00000732294.1	LINC01569-220	1081	No protein	-	lncRNA	-	-
ENST00000732300.1	LINC01569-226	1065	No protein	-	lncRNA	-	-
ENST00000732291.1	LINC01569-217	1060	No protein	-	lncRNA	-	-
ENST00000732293.1	LINC01569-219	1053	No protein	-	lncRNA	-	-
ENST00000701924.2	LINC01569-216	1045	No protein	-	lncRNA	-	-
ENST00000732298.1	LINC01569-224	1039	No protein	-	lncRNA	-	-
ENST00000732305.1	LINC01569-231	1034	No protein	-	lncRNA	-	-
ENST00000732301.1	LINC01569-227	1023	No protein	-	lncRNA	-	-
ENST00000732296.1	LINC01569-222	980	No protein	-	lncRNA	-	-
ENST00000732299.1	LINC01569-225	969	No protein	-	lncRNA	-	-
ENST00000732303.1	LINC01569-229	957	No protein	-	lncRNA	-	-
ENST00000648147.1	LINC01569-206	872	No protein	-	lncRNA	-	-
ENST00000573268.1	LINC01569-203	694	No protein	-	lncRNA	-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENST00000732306.1	LINC01569-232	386	No protein	-	lncRNA	-	-

Summary

Statistics

Exons: 3, Coding exons: 0, Transcript length: 1,903 bps,

Version

ENST00000648108.1

Type

LncRNA

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Annotation Attributes

RNA-Seq supported only [Definitions]

Transcript: ENST00000648108.1 LINC01569-205

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Transcript: ENST00000648108.1 LINC01569-205

Summary

About Us

Get help

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