Transcript: ENST00000539975.5 SNHG1-212

Description

small nucleolar RNA host gene 1 [Source:HGNC Symbol;Acc:HGNC:32688]

Gene Synonyms

LINC00057, LNCRNA16, NCRNA00057, UHG

Location

Chromosome 11: 62,852,020-62,855,236 reverse strand.

About this transcript

This transcript has 7 exons and maps to 506 oligo probes.

Gene

This transcript is a product of gene ENSG00000255717.10 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	RefSeq Match	Flags
ENST00000665371.1	SNHG1-245	3294	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-
ENST00000535076.6	SNHG1-201	2812	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENST00000537965.6	SNHG1-207	2772	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENST00000538654.6	SNHG1-209	2769	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENST00000661616.2	SNHG1-237	2338	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-
ENST00000535689.7	SNHG1-202	2185	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENST00000541416.7	SNHG1-216	2151	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENST00000544550.7	SNHG1-220	1748	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENST00000537024.6	SNHG1-203	1727	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENST00000545688.6	SNHG1-224	1398	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENST00000540865.5	SNHG1-214	784	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENST00000545308.5	SNHG1-222	646	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENST00000540904.1	SNHG1-215	594	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENST00000742439.1	SNHG1-281	1290	No protein	-	lncRNA	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary,
ENST00000668048.2	SNHG1-248	4056	No protein	-	lncRNA	-	-
ENST00000656268.1	SNHG1-231	3771	No protein	-	lncRNA	-	-
ENST00000742695.1	SNHG1-537	3686	No protein	-	lncRNA	-	-
ENST00000742637.1	SNHG1-479	3562	No protein	-	lncRNA	-	-
ENST00000660960.2	SNHG1-236	3559	No protein	-	lncRNA	-	-
ENST00000545920.2	SNHG1-225	3527	No protein	-	lncRNA	-	TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENST00000655919.1	SNHG1-228	3489	No protein	-	lncRNA	-	-
ENST00000742605.1	SNHG1-447	3462	No protein	-	lncRNA	-	-
ENST00000742607.1	SNHG1-449	3378	No protein	-	lncRNA	-	-
ENST00000742643.1	SNHG1-485	3374	No protein	-	lncRNA	-	-
ENST00000664307.2	SNHG1-244	3334	No protein	-	lncRNA	-	-
ENST00000668309.2	SNHG1-249	3331	No protein	-	lncRNA	-	-
ENST00000742554.1	SNHG1-396	3315	No protein	-	lncRNA	-	-
ENST00000742564.1	SNHG1-406	3260	No protein	-	lncRNA	-	-
ENST00000742587.1	SNHG1-429	3252	No protein	-	lncRNA	-	-
ENST00000742578.1	SNHG1-420	3233	No protein	-	lncRNA	-	-
ENST00000742589.1	SNHG1-431	3161	No protein	-	lncRNA	-	-
ENST00000742630.1	SNHG1-472	3134	No protein	-	lncRNA	-	-
ENST00000742581.1	SNHG1-423	3123	No protein	-	lncRNA	-	-
ENST00000663237.1	SNHG1-242	3119	No protein	-	lncRNA	-	-
ENST00000742453.1	SNHG1-295	3109	No protein	-	lncRNA	-	-
ENST00000665512.2	SNHG1-246	3074	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000742648.1	SNHG1-490	3047	No protein	-	lncRNA	-	-
ENST00000652879.1	SNHG1-226	2982	No protein	-	lncRNA	-	-
ENST00000742651.1	SNHG1-493	2959	No protein	-	lncRNA	-	-
ENST00000742516.1	SNHG1-358	2954	No protein	-	lncRNA	-	-
ENST00000742585.1	SNHG1-427	2954	No protein	-	lncRNA	-	-
ENST00000742654.1	SNHG1-496	2924	No protein	-	lncRNA	-	-
ENST00000742624.1	SNHG1-466	2921	No protein	-	lncRNA	-	-
ENST00000742499.1	SNHG1-341	2888	No protein	-	lncRNA	-	-
ENST00000742534.1	SNHG1-376	2845	No protein	-	lncRNA	-	-
ENST00000671236.1	SNHG1-254	2843	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000742579.1	SNHG1-421	2836	No protein	-	lncRNA	-	-
ENST00000670729.2	SNHG1-253	2822	No protein	-	lncRNA	-	-
ENST00000742553.1	SNHG1-395	2797	No protein	-	lncRNA	-	-
ENST00000742594.1	SNHG1-436	2797	No protein	-	lncRNA	-	-
ENST00000742662.1	SNHG1-504	2796	No protein	-	lncRNA	-	-
ENST00000742629.1	SNHG1-471	2770	No protein	-	lncRNA	-	-
ENST00000742647.1	SNHG1-489	2705	No protein	-	lncRNA	-	-
ENST00000742570.1	SNHG1-412	2704	No protein	-	lncRNA	-	-
ENST00000742676.1	SNHG1-518	2701	No protein	-	lncRNA	-	-
ENST00000742572.1	SNHG1-414	2669	No protein	-	lncRNA	-	-
ENST00000742710.1	SNHG1-552	2642	No protein	-	lncRNA	-	-
ENST00000742680.1	SNHG1-522	2637	No protein	-	lncRNA	-	-
ENST00000742699.1	SNHG1-541	2632	No protein	-	lncRNA	-	-
ENST00000742552.1	SNHG1-394	2596	No protein	-	lncRNA	-	-
ENST00000742573.1	SNHG1-415	2575	No protein	-	lncRNA	-	-
ENST00000662400.1	SNHG1-240	2560	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000742642.1	SNHG1-484	2553	No protein	-	lncRNA	-	-
ENST00000742576.1	SNHG1-418	2552	No protein	-	lncRNA	-	-
ENST00000742663.1	SNHG1-505	2541	No protein	-	lncRNA	-	-
ENST00000742616.1	SNHG1-458	2535	No protein	-	lncRNA	-	-
ENST00000742545.1	SNHG1-387	2519	No protein	-	lncRNA	-	-
ENST00000742645.1	SNHG1-487	2479	No protein	-	lncRNA	-	-
ENST00000670469.1	SNHG1-251	2470	No protein	-	lncRNA	-	-
ENST00000656240.1	SNHG1-229	2456	No protein	-	lncRNA	-	-
ENST00000742550.1	SNHG1-392	2434	No protein	-	lncRNA	-	-
ENST00000742446.1	SNHG1-288	2433	No protein	-	lncRNA	-	-
ENST00000742692.1	SNHG1-534	2407	No protein	-	lncRNA	-	-
ENST00000742484.1	SNHG1-326	2404	No protein	-	lncRNA	-	-
ENST00000742604.1	SNHG1-446	2391	No protein	-	lncRNA	-	-
ENST00000742635.1	SNHG1-477	2378	No protein	-	lncRNA	-	-
ENST00000742509.1	SNHG1-351	2369	No protein	-	lncRNA	-	-
ENST00000662229.2	SNHG1-239	2368	No protein	-	lncRNA	-	-
ENST00000742703.1	SNHG1-545	2353	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000661936.1	SNHG1-238	2345	No protein	-	lncRNA	-	-
ENST00000742500.1	SNHG1-342	2333	No protein	-	lncRNA	-	-
ENST00000742543.1	SNHG1-385	2316	No protein	-	lncRNA	-	-
ENST00000742670.1	SNHG1-512	2314	No protein	-	lncRNA	-	-
ENST00000742502.1	SNHG1-344	2312	No protein	-	lncRNA	-	-
ENST00000742681.1	SNHG1-523	2286	No protein	-	lncRNA	-	-
ENST00000742501.1	SNHG1-343	2283	No protein	-	lncRNA	-	-
ENST00000742704.1	SNHG1-546	2275	No protein	-	lncRNA	-	-
ENST00000742533.1	SNHG1-375	2269	No protein	-	lncRNA	-	-
ENST00000742483.1	SNHG1-325	2266	No protein	-	lncRNA	-	-
ENST00000742443.1	SNHG1-285	2250	No protein	-	lncRNA	-	-
ENST00000742641.1	SNHG1-483	2250	No protein	-	lncRNA	-	-
ENST00000742546.1	SNHG1-388	2227	No protein	-	lncRNA	-	-
ENST00000742708.1	SNHG1-550	2213	No protein	-	lncRNA	-	-
ENST00000742526.1	SNHG1-368	2212	No protein	-	lncRNA	-	-
ENST00000742595.1	SNHG1-437	2210	No protein	-	lncRNA	-	-
ENST00000742675.1	SNHG1-517	2203	No protein	-	lncRNA	-	-
ENST00000742700.1	SNHG1-542	2200	No protein	-	lncRNA	-	-
ENST00000742568.1	SNHG1-410	2199	No protein	-	lncRNA	-	-
ENST00000742687.1	SNHG1-529	2193	No protein	-	lncRNA	-	-
ENST00000742682.1	SNHG1-524	2191	No protein	-	lncRNA	-	-
ENST00000656589.2	SNHG1-232	2190	No protein	-	lncRNA	-	-
ENST00000742510.1	SNHG1-352	2174	No protein	-	lncRNA	-	-
ENST00000742711.1	SNHG1-553	2161	No protein	-	lncRNA	-	-
ENST00000742551.1	SNHG1-393	2159	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000742547.1	SNHG1-389	2131	No protein	-	lncRNA	-	-
ENST00000742517.1	SNHG1-359	2122	No protein	-	lncRNA	-	-
ENST00000742556.1	SNHG1-398	2117	No protein	-	lncRNA	-	-
ENST00000742542.1	SNHG1-384	2086	No protein	-	lncRNA	-	-
ENST00000742575.1	SNHG1-417	2081	No protein	-	lncRNA	-	-
ENST00000742644.1	SNHG1-486	2081	No protein	-	lncRNA	-	-
ENST00000742657.1	SNHG1-499	2076	No protein	-	lncRNA	-	-
ENST00000742619.1	SNHG1-461	2065	No protein	-	lncRNA	-	-
ENST00000742610.1	SNHG1-452	2064	No protein	-	lncRNA	-	-
ENST00000742677.1	SNHG1-519	2062	No protein	-	lncRNA	-	-
ENST00000742498.1	SNHG1-340	2039	No protein	-	lncRNA	-	-
ENST00000742650.1	SNHG1-492	2030	No protein	-	lncRNA	-	-
ENST00000742701.1	SNHG1-543	2028	No protein	-	lncRNA	-	-
ENST00000742527.1	SNHG1-369	2005	No protein	-	lncRNA	-	-
ENST00000742639.1	SNHG1-481	1998	No protein	-	lncRNA	-	-
ENST00000742466.1	SNHG1-308	1989	No protein	-	lncRNA	-	-
ENST00000742459.1	SNHG1-301	1975	No protein	-	lncRNA	-	-
ENST00000742464.1	SNHG1-306	1971	No protein	-	lncRNA	-	-
ENST00000742602.1	SNHG1-444	1970	No protein	-	lncRNA	-	-
ENST00000742632.1	SNHG1-474	1970	No protein	-	lncRNA	-	-
ENST00000544983.2	SNHG1-221	1968	No protein	-	lncRNA	-	TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENST00000742519.1	SNHG1-361	1967	No protein	-	lncRNA	-	-
ENST00000742441.1	SNHG1-283	1967	No protein	-	lncRNA	-	-
ENST00000742467.1	SNHG1-309	1966	No protein	-	lncRNA	-	-
ENST00000742531.1	SNHG1-373	1955	No protein	-	lncRNA	-	-
ENST00000656241.2	SNHG1-230	1947	No protein	-	lncRNA	-	-
ENST00000660730.1	SNHG1-235	1944	No protein	-	lncRNA	-	-
ENST00000742660.1	SNHG1-502	1943	No protein	-	lncRNA	-	-
ENST00000742599.1	SNHG1-441	1935	No protein	-	lncRNA	-	-
ENST00000742569.1	SNHG1-411	1933	No protein	-	lncRNA	-	-
ENST00000742582.1	SNHG1-424	1925	No protein	-	lncRNA	-	-
ENST00000670323.2	SNHG1-250	1915	No protein	-	lncRNA	-	-
ENST00000742691.1	SNHG1-533	1908	No protein	-	lncRNA	-	-
ENST00000742520.1	SNHG1-362	1880	No protein	-	lncRNA	-	-
ENST00000742532.1	SNHG1-374	1880	No protein	-	lncRNA	-	-
ENST00000742614.1	SNHG1-456	1854	No protein	-	lncRNA	-	-
ENST00000742634.1	SNHG1-476	1852	No protein	-	lncRNA	-	-
ENST00000742507.1	SNHG1-349	1830	No protein	-	lncRNA	-	-
ENST00000742487.1	SNHG1-329	1830	No protein	-	lncRNA	-	-
ENST00000742444.1	SNHG1-286	1814	No protein	-	lncRNA	-	-
ENST00000742496.1	SNHG1-338	1802	No protein	-	lncRNA	-	-
ENST00000742537.1	SNHG1-379	1800	No protein	-	lncRNA	-	-
ENST00000742562.1	SNHG1-404	1799	No protein	-	lncRNA	-	-
ENST00000742493.1	SNHG1-335	1795	No protein	-	lncRNA	-	-
ENST00000667655.2	SNHG1-247	1795	No protein	-	lncRNA	-	-
ENST00000660547.2	SNHG1-234	1787	No protein	-	lncRNA	-	-
ENST00000742536.1	SNHG1-378	1763	No protein	-	lncRNA	-	-
ENST00000742706.1	SNHG1-548	1758	No protein	-	lncRNA	-	-
ENST00000742494.1	SNHG1-336	1758	No protein	-	lncRNA	-	-
ENST00000742646.1	SNHG1-488	1752	No protein	-	lncRNA	-	-
ENST00000670502.1	SNHG1-252	1752	No protein	-	lncRNA	-	-
ENST00000742669.1	SNHG1-511	1749	No protein	-	lncRNA	-	-
ENST00000742694.1	SNHG1-536	1749	No protein	-	lncRNA	-	-
ENST00000742521.1	SNHG1-363	1744	No protein	-	lncRNA	-	-
ENST00000742696.1	SNHG1-538	1743	No protein	-	lncRNA	-	-
ENST00000742698.1	SNHG1-540	1737	No protein	-	lncRNA	-	-
ENST00000692454.1	SNHG1-272	1735	No protein	-	lncRNA	-	-
ENST00000742627.1	SNHG1-469	1730	No protein	-	lncRNA	-	-
ENST00000742540.1	SNHG1-382	1728	No protein	-	lncRNA	-	-
ENST00000742474.1	SNHG1-316	1721	No protein	-	lncRNA	-	-
ENST00000742638.1	SNHG1-480	1705	No protein	-	lncRNA	-	-
ENST00000742525.1	SNHG1-367	1702	No protein	-	lncRNA	-	-
ENST00000742514.1	SNHG1-356	1700	No protein	-	lncRNA	-	-
ENST00000742468.1	SNHG1-310	1698	No protein	-	lncRNA	-	-
ENST00000742673.1	SNHG1-515	1695	No protein	-	lncRNA	-	-
ENST00000742489.1	SNHG1-331	1687	No protein	-	lncRNA	-	-
ENST00000742492.1	SNHG1-334	1686	No protein	-	lncRNA	-	-
ENST00000742598.1	SNHG1-440	1673	No protein	-	lncRNA	-	-
ENST00000742671.1	SNHG1-513	1671	No protein	-	lncRNA	-	-
ENST00000742457.1	SNHG1-299	1669	No protein	-	lncRNA	-	-
ENST00000742580.1	SNHG1-422	1664	No protein	-	lncRNA	-	-
ENST00000742506.1	SNHG1-348	1663	No protein	-	lncRNA	-	-
ENST00000742442.1	SNHG1-284	1662	No protein	-	lncRNA	-	-
ENST00000742447.1	SNHG1-289	1644	No protein	-	lncRNA	-	-
ENST00000742590.1	SNHG1-432	1638	No protein	-	lncRNA	-	-
ENST00000742472.1	SNHG1-314	1630	No protein	-	lncRNA	-	-
ENST00000742491.1	SNHG1-333	1620	No protein	-	lncRNA	-	-
ENST00000742565.1	SNHG1-407	1620	No protein	-	lncRNA	-	-
ENST00000742560.1	SNHG1-402	1614	No protein	-	lncRNA	-	-
ENST00000691324.2	SNHG1-271	1613	No protein	-	lncRNA	-	-
ENST00000742503.1	SNHG1-345	1611	No protein	-	lncRNA	-	-
ENST00000742538.1	SNHG1-380	1611	No protein	-	lncRNA	-	-
ENST00000742667.1	SNHG1-509	1603	No protein	-	lncRNA	-	-
ENST00000742649.1	SNHG1-491	1599	No protein	-	lncRNA	-	-
ENST00000742481.1	SNHG1-323	1586	No protein	-	lncRNA	-	-
ENST00000742709.1	SNHG1-551	1579	No protein	-	lncRNA	-	-
ENST00000742596.1	SNHG1-438	1578	No protein	-	lncRNA	-	-
ENST00000742477.1	SNHG1-319	1570	No protein	-	lncRNA	-	-
ENST00000742571.1	SNHG1-413	1567	No protein	-	lncRNA	-	-
ENST00000742628.1	SNHG1-470	1557	No protein	-	lncRNA	-	-
ENST00000742563.1	SNHG1-405	1548	No protein	-	lncRNA	-	-
ENST00000742479.1	SNHG1-321	1545	No protein	-	lncRNA	-	-
ENST00000742688.1	SNHG1-530	1544	No protein	-	lncRNA	-	-
ENST00000742463.1	SNHG1-305	1535	No protein	-	lncRNA	-	-
ENST00000742548.1	SNHG1-390	1529	No protein	-	lncRNA	-	-
ENST00000658540.2	SNHG1-233	1521	No protein	-	lncRNA	-	-
ENST00000742612.1	SNHG1-454	1521	No protein	-	lncRNA	-	-
ENST00000742584.1	SNHG1-426	1516	No protein	-	lncRNA	-	-
ENST00000742678.1	SNHG1-520	1514	No protein	-	lncRNA	-	-
ENST00000702248.1	SNHG1-278	1508	No protein	-	lncRNA	-	-
ENST00000742689.1	SNHG1-531	1507	No protein	-	lncRNA	-	-
ENST00000742523.1	SNHG1-365	1504	No protein	-	lncRNA	-	-
ENST00000742656.1	SNHG1-498	1501	No protein	-	lncRNA	-	-
ENST00000742586.1	SNHG1-428	1498	No protein	-	lncRNA	-	-
ENST00000742558.1	SNHG1-400	1493	No protein	-	lncRNA	-	-
ENST00000537925.5	SNHG1-206	1487	No protein	-	lncRNA	-	TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENST00000742471.1	SNHG1-313	1480	No protein	-	lncRNA	-	-
ENST00000742450.1	SNHG1-292	1474	No protein	-	lncRNA	-	-
ENST00000742626.1	SNHG1-468	1462	No protein	-	lncRNA	-	-
ENST00000742720.1	SNHG1-562	1460	No protein	-	lncRNA	-	-
ENST00000742574.1	SNHG1-416	1453	No protein	-	lncRNA	-	-
ENST00000653690.2	SNHG1-227	1452	No protein	-	lncRNA	-	-
ENST00000541615.6	SNHG1-218	1447	No protein	-	lncRNA	-	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENST00000742686.1	SNHG1-528	1434	No protein	-	lncRNA	-	-
ENST00000742486.1	SNHG1-328	1427	No protein	-	lncRNA	-	-
ENST00000742462.1	SNHG1-304	1421	No protein	-	lncRNA	-	-
ENST00000742448.1	SNHG1-290	1419	No protein	-	lncRNA	-	-
ENST00000545440.6	SNHG1-223	1416	No protein	-	lncRNA	-	TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENST00000742622.1	SNHG1-464	1411	No protein	-	lncRNA	-	-
ENST00000742620.1	SNHG1-462	1410	No protein	-	lncRNA	-	-
ENST00000540725.7	SNHG1-213	1408	No protein	-	lncRNA	-	TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENST00000742633.1	SNHG1-475	1408	No protein	-	lncRNA	-	-
ENST00000742655.1	SNHG1-497	1400	No protein	-	lncRNA	-	-
ENST00000663092.2	SNHG1-241	1394	No protein	-	lncRNA	-	-
ENST00000742476.1	SNHG1-318	1387	No protein	-	lncRNA	-	-
ENST00000742470.1	SNHG1-312	1386	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000742480.1	SNHG1-322	1380	No protein	-	lncRNA	-	-
ENST00000742685.1	SNHG1-527	1367	No protein	-	lncRNA	-	-
ENST00000742659.1	SNHG1-501	1361	No protein	-	lncRNA	-	-
ENST00000742672.1	SNHG1-514	1359	No protein	-	lncRNA	-	-
ENST00000742451.1	SNHG1-293	1355	No protein	-	lncRNA	-	-
ENST00000742528.1	SNHG1-370	1350	No protein	-	lncRNA	-	-
ENST00000742460.1	SNHG1-302	1349	No protein	-	lncRNA	-	-
ENST00000742458.1	SNHG1-300	1345	No protein	-	lncRNA	-	-
ENST00000742535.1	SNHG1-377	1335	No protein	-	lncRNA	-	-
ENST00000742601.1	SNHG1-443	1332	No protein	-	lncRNA	-	-
ENST00000742631.1	SNHG1-473	1331	No protein	-	lncRNA	-	-
ENST00000742469.1	SNHG1-311	1330	No protein	-	lncRNA	-	-
ENST00000742683.1	SNHG1-525	1326	No protein	-	lncRNA	-	-
ENST00000742577.1	SNHG1-419	1325	No protein	-	lncRNA	-	-
ENST00000742693.1	SNHG1-535	1325	No protein	-	lncRNA	-	-
ENST00000663967.2	SNHG1-243	1323	No protein	-	lncRNA	-	-
ENST00000742715.1	SNHG1-557	1316	No protein	-	lncRNA	-	-
ENST00000742588.1	SNHG1-430	1315	No protein	-	lncRNA	-	-
ENST00000742712.1	SNHG1-554	1312	No protein	-	lncRNA	-	-
ENST00000742567.1	SNHG1-409	1311	No protein	-	lncRNA	-	-
ENST00000686740.2	SNHG1-262	1311	No protein	-	lncRNA	-	-
ENST00000688102.2	SNHG1-265	1310	No protein	-	lncRNA	-	-
ENST00000742592.1	SNHG1-434	1309	No protein	-	lncRNA	-	-
ENST00000742593.1	SNHG1-435	1307	No protein	-	lncRNA	-	-
ENST00000742583.1	SNHG1-425	1303	No protein	-	lncRNA	-	-
ENST00000742518.1	SNHG1-360	1297	No protein	-	lncRNA	-	-
ENST00000742541.1	SNHG1-383	1297	No protein	-	lncRNA	-	-
ENST00000742697.1	SNHG1-539	1297	No protein	-	lncRNA	-	-
ENST00000742566.1	SNHG1-408	1296	No protein	-	lncRNA	-	-
ENST00000742668.1	SNHG1-510	1292	No protein	-	lncRNA	-	-
ENST00000742591.1	SNHG1-433	1290	No protein	-	lncRNA	-	-
ENST00000742653.1	SNHG1-495	1285	No protein	-	lncRNA	-	-
ENST00000687029.1	SNHG1-263	1282	No protein	-	lncRNA	-	-
ENST00000742454.1	SNHG1-296	1272	No protein	-	lncRNA	-	-
ENST00000742508.1	SNHG1-350	1268	No protein	-	lncRNA	-	-
ENST00000742674.1	SNHG1-516	1267	No protein	-	lncRNA	-	-
ENST00000742455.1	SNHG1-297	1257	No protein	-	lncRNA	-	-
ENST00000742718.1	SNHG1-560	1256	No protein	-	lncRNA	-	-
ENST00000742615.1	SNHG1-457	1252	No protein	-	lncRNA	-	-
ENST00000742449.1	SNHG1-291	1250	No protein	-	lncRNA	-	-
ENST00000742549.1	SNHG1-391	1248	No protein	-	lncRNA	-	-
ENST00000742561.1	SNHG1-403	1237	No protein	-	lncRNA	-	-
ENST00000742539.1	SNHG1-381	1232	No protein	-	lncRNA	-	-
ENST00000742452.1	SNHG1-294	1228	No protein	-	lncRNA	-	-
ENST00000742661.1	SNHG1-503	1220	No protein	-	lncRNA	-	-
ENST00000742623.1	SNHG1-465	1218	No protein	-	lncRNA	-	-
ENST00000742702.1	SNHG1-544	1218	No protein	-	lncRNA	-	-
ENST00000742640.1	SNHG1-482	1212	No protein	-	lncRNA	-	-
ENST00000742461.1	SNHG1-303	1202	No protein	-	lncRNA	-	-
ENST00000689147.2	SNHG1-266	1197	No protein	-	lncRNA	-	-
ENST00000742473.1	SNHG1-315	1183	No protein	-	lncRNA	-	-
ENST00000541578.7	SNHG1-217	1177	No protein	-	lncRNA	-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENST00000701467.1	SNHG1-276	1173	No protein	-	lncRNA	-	-
ENST00000742608.1	SNHG1-450	1170	No protein	-	lncRNA	-	-
ENST00000686478.1	SNHG1-259	1147	No protein	-	lncRNA	-	-
ENST00000742529.1	SNHG1-371	1132	No protein	-	lncRNA	-	-
ENST00000686670.1	SNHG1-261	1132	No protein	-	lncRNA	-	-
ENST00000742482.1	SNHG1-324	1132	No protein	-	lncRNA	-	-
ENST00000742658.1	SNHG1-500	1129	No protein	-	lncRNA	-	-
ENST00000742666.1	SNHG1-508	1122	No protein	-	lncRNA	-	-
ENST00000742488.1	SNHG1-330	1120	No protein	-	lncRNA	-	-
ENST00000539921.9	SNHG1-211	1114	No protein	-	lncRNA	-	TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENST00000742456.1	SNHG1-298	1114	No protein	-	lncRNA	-	-
ENST00000685229.2	SNHG1-255	1109	No protein	-	lncRNA	-	-
ENST00000702430.1	SNHG1-280	1109	No protein	-	lncRNA	-	-
ENST00000686500.3	SNHG1-260	1106	No protein	-	lncRNA	-	-
ENST00000742625.1	SNHG1-467	1103	No protein	-	lncRNA	-	-
ENST00000742609.1	SNHG1-451	1102	No protein	-	lncRNA	-	-
ENST00000742440.1	SNHG1-282	1094	No protein	-	lncRNA	-	-
ENST00000692887.1	SNHG1-273	1092	No protein	-	lncRNA	-	-
ENST00000685577.1	SNHG1-256	1089	No protein	-	lncRNA	-	-
ENST00000742465.1	SNHG1-307	1087	No protein	-	lncRNA	-	-
ENST00000742530.1	SNHG1-372	1084	No protein	-	lncRNA	-	-
ENST00000537869.8	SNHG1-205	1082	No protein	-	lncRNA	-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENST00000742485.1	SNHG1-327	1081	No protein	-	lncRNA	-	-
ENST00000742721.1	SNHG1-563	1078	No protein	-	lncRNA	-	-
ENST00000691255.1	SNHG1-270	1073	No protein	-	lncRNA	-	-
ENST00000742522.1	SNHG1-364	1061	No protein	-	lncRNA	-	-
ENST00000742557.1	SNHG1-399	1060	No protein	-	lncRNA	-	-
ENST00000742445.1	SNHG1-287	1059	No protein	-	lncRNA	-	-
ENST00000742544.1	SNHG1-386	1056	No protein	-	lncRNA	-	-
ENST00000542112.6	SNHG1-219	1055	No protein	-	lncRNA	-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENST00000742559.1	SNHG1-401	1052	No protein	-	lncRNA	-	-
ENST00000742597.1	SNHG1-439	1035	No protein	-	lncRNA	-	-
ENST00000687243.1	SNHG1-264	1033	No protein	-	lncRNA	-	-
ENST00000742679.1	SNHG1-521	1033	No protein	-	lncRNA	-	-
ENST00000690476.3	SNHG1-268	1031	No protein	-	lncRNA	-	-
ENST00000742505.1	SNHG1-347	1031	No protein	-	lncRNA	-	-
ENST00000686081.2	SNHG1-258	1028	No protein	-	lncRNA	-	-
ENST00000742719.1	SNHG1-561	1026	No protein	-	lncRNA	-	-
ENST00000742478.1	SNHG1-320	1026	No protein	-	lncRNA	-	-
ENST00000742707.1	SNHG1-549	1026	No protein	-	lncRNA	-	-
ENST00000742618.1	SNHG1-460	1025	No protein	-	lncRNA	-	-
ENST00000742621.1	SNHG1-463	1002	No protein	-	lncRNA	-	-
ENST00000702009.2	SNHG1-277	994	No protein	-	lncRNA	-	-
ENST00000686008.2	SNHG1-257	990	No protein	-	lncRNA	-	-
ENST00000742611.1	SNHG1-453	984	No protein	-	lncRNA	-	-
ENST00000742524.1	SNHG1-366	978	No protein	-	lncRNA	-	-
ENST00000693734.2	SNHG1-274	975	No protein	-	lncRNA	-	-
ENST00000742714.1	SNHG1-556	974	No protein	-	lncRNA	-	-
ENST00000742600.1	SNHG1-442	955	No protein	-	lncRNA	-	-
ENST00000539975.5	SNHG1-212	955	No protein	-	lncRNA	-	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENST00000700852.2	SNHG1-275	949	No protein	-	lncRNA	-	-
ENST00000742705.1	SNHG1-547	948	No protein	-	lncRNA	-	-
ENST00000742515.1	SNHG1-357	947	No protein	-	lncRNA	-	-
ENST00000742490.1	SNHG1-332	945	No protein	-	lncRNA	-	-
ENST00000742713.1	SNHG1-555	944	No protein	-	lncRNA	-	-
ENST00000690542.2	SNHG1-269	938	No protein	-	lncRNA	-	-
ENST00000742613.1	SNHG1-455	935	No protein	-	lncRNA	-	-
ENST00000742512.1	SNHG1-354	933	No protein	-	lncRNA	-	-
ENST00000742555.1	SNHG1-397	928	No protein	-	lncRNA	-	-
ENST00000742513.1	SNHG1-355	926	No protein	-	lncRNA	-	-
ENST00000742504.1	SNHG1-346	912	No protein	-	lncRNA	-	-
ENST00000689664.2	SNHG1-267	908	No protein	-	lncRNA	-	-
ENST00000742664.1	SNHG1-506	902	No protein	-	lncRNA	-	-
ENST00000539303.7	SNHG1-210	900	No protein	-	lncRNA	-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENST00000742690.1	SNHG1-532	888	No protein	-	lncRNA	-	-
ENST00000742652.1	SNHG1-494	886	No protein	-	lncRNA	-	-
ENST00000742617.1	SNHG1-459	828	No protein	-	lncRNA	-	-
ENST00000742684.1	SNHG1-526	824	No protein	-	lncRNA	-	-
ENST00000742475.1	SNHG1-317	813	No protein	-	lncRNA	-	-
ENST00000742497.1	SNHG1-339	812	No protein	-	lncRNA	-	-
ENST00000742495.1	SNHG1-337	802	No protein	-	lncRNA	-	-
ENST00000742511.1	SNHG1-353	798	No protein	-	lncRNA	-	-
ENST00000742603.1	SNHG1-445	790	No protein	-	lncRNA	-	-
ENST00000742636.1	SNHG1-478	789	No protein	-	lncRNA	-	-
ENST00000742606.1	SNHG1-448	744	No protein	-	lncRNA	-	-
ENST00000742665.1	SNHG1-507	646	No protein	-	lncRNA	-	-
ENST00000537068.5	SNHG1-204	629	No protein	-	lncRNA	-	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENST00000742717.1	SNHG1-559	572	No protein	-	lncRNA	-	-
ENST00000742716.1	SNHG1-558	525	No protein	-	lncRNA	-	-
ENST00000702381.1	SNHG1-279	349	No protein	-	lncRNA	-	-
ENST00000538266.5	SNHG1-208	347	No protein	-	lncRNA	-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,

Summary

Statistics

Exons: 7, Coding exons: 0, Transcript length: 955 bps,

Transcript Support Level (TSL)

TSL:5

Version

ENST00000539975.5

Type

LncRNA

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Annotation Attributes

dotter confirmed [Definitions]

Transcript: ENST00000539975.5 SNHG1-212

Summary

About Us

Get help

Our sister sites

Follow us

Favourite species

All species

Recent locations

Transcript: ENST00000539975.5 SNHG1-212

Summary

About Us

Get help

Our sister sites

Follow us