Transcript: ENST00000668863.2 LINC01340-209

Description

long intergenic non-protein coding RNA 1340 [Source:HGNC Symbol;Acc:HGNC:50550]

Location

Chromosome 5: 97,504,589-97,671,633 forward strand.

About this transcript

This transcript has 3 exons and maps to 122 oligo probes.

Gene

This transcript is a product of gene ENSG00000250331.3 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	RefSeq Match	Flags
ENST00000746238.1	LINC01340-212	1529	No protein	-	lncRNA	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000746247.1	LINC01340-221	2605	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000746244.1	LINC01340-218	2006	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000746245.1	LINC01340-219	1965	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000746251.1	LINC01340-225	1963	No protein	-	lncRNA	-	-
ENST00000669006.2	LINC01340-210	1749	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000746240.1	LINC01340-214	1631	No protein	-	lncRNA	-	-
ENST00000746239.1	LINC01340-213	1627	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000666358.1	LINC01340-207	1577	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000663326.1	LINC01340-206	1564	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000657058.1	LINC01340-205	1555	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000668472.1	LINC01340-208	1486	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000668863.2	LINC01340-209	1356	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000746252.1	LINC01340-226	1237	No protein	-	lncRNA	-	-
ENST00000746248.1	LINC01340-222	1144	No protein	-	lncRNA	-	-
ENST00000746242.1	LINC01340-216	1105	No protein	-	lncRNA	-	-
ENST00000746260.1	LINC01340-234	1092	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000746258.1	LINC01340-232	1045	No protein	-	lncRNA	-	-
ENST00000502324.2	LINC01340-201	1037	No protein	-	lncRNA	-	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENST00000746246.1	LINC01340-220	1023	No protein	-	lncRNA	-	-
ENST00000746253.1	LINC01340-227	998	No protein	-	lncRNA	-	-
ENST00000746241.1	LINC01340-215	981	No protein	-	lncRNA	-	-
ENST00000746243.1	LINC01340-217	973	No protein	-	lncRNA	-	-
ENST00000746257.1	LINC01340-231	922	No protein	-	lncRNA	-	-
ENST00000746249.1	LINC01340-223	824	No protein	-	lncRNA	-	-
ENST00000656559.1	LINC01340-204	805	No protein	-	lncRNA	-	-
ENST00000746259.1	LINC01340-233	794	No protein	-	lncRNA	-	-
ENST00000504012.2	LINC01340-202	741	No protein	-	lncRNA	-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENST00000513288.1	LINC01340-203	705	No protein	-	lncRNA	-	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENST00000715761.1	LINC01340-211	666	No protein	-	lncRNA	-	-
ENST00000746262.1	LINC01340-236	601	No protein	-	lncRNA	-	-
ENST00000746255.1	LINC01340-229	583	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000746256.1	LINC01340-230	514	No protein	-	lncRNA	-	-
ENST00000746261.1	LINC01340-235	484	No protein	-	lncRNA	-	-
ENST00000746250.1	LINC01340-224	428	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000746254.1	LINC01340-228	360	No protein	-	lncRNA	-	-

Summary

Statistics

Exons: 3, Coding exons: 0, Transcript length: 1,356 bps,

Version

ENST00000668863.2

Type

LncRNA

Annotation Method

Transcript which was created by the HAVANA-Ensembl manually supervised computational pipeline (TAGENE) for long-read sequence data.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENST00000668863.2 LINC01340-209

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Transcript: ENST00000668863.2 LINC01340-209

Summary

About Us

Get help

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