Transcript: ENST00000503456.2 PANCR-201

Description

PITX2 adjacent non-coding RNA [Source:HGNC Symbol;Acc:HGNC:52282]

Location

Chromosome 4: 110,603,055-110,615,562 reverse strand.

About this transcript

This transcript has 4 exons and maps to 173 oligo probes.

Gene

This transcript is a product of gene ENSG00000250103.4 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	RefSeq Match	Flags
ENST00000791959.1	PANCR-205	2044	No protein	-	lncRNA	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary,
ENST00000791961.1	PANCR-207	1579	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000690430.2	PANCR-204	1484	No protein	-	lncRNA	-	-
ENST00000503998.1	PANCR-202	1447	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENST00000792108.1	PANCR-221	1392	No protein	-	lncRNA	-	-
ENST00000792104.1	PANCR-217	1298	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000792105.1	PANCR-218	1238	No protein	-	lncRNA	-	-
ENST00000792109.1	PANCR-222	1210	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000791960.1	PANCR-206	1202	No protein	-	lncRNA	-	-
ENST00000792107.1	PANCR-220	1195	No protein	-	lncRNA	-	-
ENST00000791963.1	PANCR-209	1178	No protein	-	lncRNA	-	-
ENST00000791962.1	PANCR-208	1087	No protein	-	lncRNA	-	-
ENST00000513690.4	PANCR-203	1017	No protein	-	lncRNA	-	TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENST00000503456.2	PANCR-201	946	No protein	-	lncRNA	-	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENST00000792120.1	PANCR-233	864	No protein	-	lncRNA	-	-
ENST00000792106.1	PANCR-219	839	No protein	-	lncRNA	-	-
ENST00000792117.1	PANCR-230	812	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000792119.1	PANCR-232	779	No protein	-	lncRNA	-	-
ENST00000792112.1	PANCR-225	729	No protein	-	lncRNA	-	-
ENST00000792114.1	PANCR-227	695	No protein	-	lncRNA	-	-
ENST00000792098.1	PANCR-211	694	No protein	-	lncRNA	-	-
ENST00000792110.1	PANCR-223	672	No protein	-	lncRNA	-	-
ENST00000792115.1	PANCR-228	666	No protein	-	lncRNA	-	-
ENST00000792099.1	PANCR-212	653	No protein	-	lncRNA	-	-
ENST00000792116.1	PANCR-229	640	No protein	-	lncRNA	-	-
ENST00000792111.1	PANCR-224	637	No protein	-	lncRNA	-	-
ENST00000792100.1	PANCR-213	626	No protein	-	lncRNA	-	-
ENST00000792101.1	PANCR-214	623	No protein	-	lncRNA	-	-
ENST00000792103.1	PANCR-216	618	No protein	-	lncRNA	-	-
ENST00000792118.1	PANCR-231	606	No protein	-	lncRNA	-	-
ENST00000792121.1	PANCR-234	599	No protein	-	lncRNA	-	-
ENST00000792102.1	PANCR-215	598	No protein	-	lncRNA	-	-
ENST00000791964.1	PANCR-210	556	No protein	-	lncRNA	-	-
ENST00000792113.1	PANCR-226	456	No protein	-	lncRNA	-	-

Summary

Statistics

Exons: 4, Coding exons: 0, Transcript length: 946 bps,

Transcript Support Level (TSL)

TSL:5

Version

ENST00000503456.2

Type

LncRNA

Annotation Method

Transcript which was created by the HAVANA-Ensembl manually supervised computational pipeline (TAGENE) for long-read sequence data.

Annotation Attributes

CAGE supported TSS [Definitions]

Transcript: ENST00000503456.2 PANCR-201

Summary

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Transcript: ENST00000503456.2 PANCR-201

Summary

About Us

Get help

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