Transcript: ENST00000507318.1 SH3TC2-DT-201

Description

SH3TC2 divergent transcript [Source:HGNC Symbol;Acc:HGNC:52905]

Location

Chromosome 5: 149,063,503-149,066,985 forward strand.

About this transcript

This transcript has 2 exons and maps to 285 oligo probes.

Gene

This transcript is a product of gene ENSG00000250072.9 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	RefSeq Match	Flags
ENST00000668914.2	SH3TC2-DT-207	1229	No protein	-	lncRNA	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary,
ENST00000507318.1	SH3TC2-DT-201	3091	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENST00000787320.1	SH3TC2-DT-213	1850	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000787344.1	SH3TC2-DT-237	1472	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000515519.7	SH3TC2-DT-206	1419	No protein	-	lncRNA	-	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENST00000787337.1	SH3TC2-DT-230	1392	No protein	-	lncRNA	-	-
ENST00000787338.1	SH3TC2-DT-231	1391	No protein	-	lncRNA	-	-
ENST00000787340.1	SH3TC2-DT-233	1390	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000787339.1	SH3TC2-DT-232	1387	No protein	-	lncRNA	-	-
ENST00000787326.1	SH3TC2-DT-219	1343	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000787335.1	SH3TC2-DT-228	1287	No protein	-	lncRNA	-	-
ENST00000787341.1	SH3TC2-DT-234	1287	No protein	-	lncRNA	-	-
ENST00000787336.1	SH3TC2-DT-229	1283	No protein	-	lncRNA	-	-
ENST00000787321.1	SH3TC2-DT-214	1262	No protein	-	lncRNA	-	-
ENST00000787323.1	SH3TC2-DT-216	1178	No protein	-	lncRNA	-	-
ENST00000685416.3	SH3TC2-DT-208	1132	No protein	-	lncRNA	-	-
ENST00000787346.1	SH3TC2-DT-239	1054	No protein	-	lncRNA	-	-
ENST00000701848.2	SH3TC2-DT-209	1000	No protein	-	lncRNA	-	-
ENST00000787324.1	SH3TC2-DT-217	956	No protein	-	lncRNA	-	-
ENST00000787345.1	SH3TC2-DT-238	940	No protein	-	lncRNA	-	-
ENST00000787328.1	SH3TC2-DT-221	917	No protein	-	lncRNA	-	-
ENST00000515304.2	SH3TC2-DT-205	914	No protein	-	lncRNA	-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENST00000512007.2	SH3TC2-DT-204	890	No protein	-	lncRNA	-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENST00000787334.1	SH3TC2-DT-227	874	No protein	-	lncRNA	-	-
ENST00000787318.1	SH3TC2-DT-211	863	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000787322.1	SH3TC2-DT-215	862	No protein	-	lncRNA	-	-
ENST00000787319.1	SH3TC2-DT-212	830	No protein	-	lncRNA	-	-
ENST00000787333.1	SH3TC2-DT-226	813	No protein	-	lncRNA	-	-
ENST00000787317.1	SH3TC2-DT-210	808	No protein	-	lncRNA	-	-
ENST00000787329.1	SH3TC2-DT-222	787	No protein	-	lncRNA	-	-
ENST00000787330.1	SH3TC2-DT-223	787	No protein	-	lncRNA	-	-
ENST00000787325.1	SH3TC2-DT-218	785	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000787343.1	SH3TC2-DT-236	774	No protein	-	lncRNA	-	-
ENST00000787327.1	SH3TC2-DT-220	742	No protein	-	lncRNA	-	-
ENST00000787342.1	SH3TC2-DT-235	699	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000509139.1	SH3TC2-DT-203	654	No protein	-	lncRNA	-	TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENST00000787348.1	SH3TC2-DT-241	617	No protein	-	lncRNA	-	-
ENST00000787331.1	SH3TC2-DT-224	568	No protein	-	lncRNA	-	-
ENST00000787347.1	SH3TC2-DT-240	557	No protein	-	lncRNA	-	-
ENST00000787332.1	SH3TC2-DT-225	499	No protein	-	lncRNA	-	-
ENST00000507373.1	SH3TC2-DT-202	437	No protein	-	lncRNA	-	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,

Summary

Statistics

Exons: 2, Coding exons: 0, Transcript length: 3,091 bps,

Transcript Support Level (TSL)

TSL:2

Version

ENST00000507318.1

Type

LncRNA

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENST00000507318.1 SH3TC2-DT-201

Summary

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Transcript: ENST00000507318.1 SH3TC2-DT-201

Summary

About Us

Get help

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