Transcript: ENST00000500381.3 LINC02458-201

Description

long intergenic non-protein coding RNA 2458 [Source:HGNC Symbol;Acc:HGNC:53394]

Location

Chromosome 12: 89,010,681-89,019,781 reverse strand.

About this transcript

This transcript has 3 exons and maps to 205 oligo probes.

Gene

This transcript is a product of gene ENSG00000246363.5 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	RefSeq Match	Flags
ENST00000549278.2	LINC02458-202	4177	No protein	-	lncRNA	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 4: A transcript where the best supporting EST is flagged as suspect The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:4,
ENST00000500381.3	LINC02458-201	3043	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENST00000846498.1	LINC02458-208	1916	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000686845.2	LINC02458-203	1581	No protein	-	lncRNA	-	-
ENST00000846505.1	LINC02458-215	1580	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000846495.1	LINC02458-205	1496	No protein	-	lncRNA	-	-
ENST00000846508.1	LINC02458-218	1348	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000846499.1	LINC02458-209	1322	No protein	-	lncRNA	-	-
ENST00000846511.1	LINC02458-221	1093	No protein	-	lncRNA	-	-
ENST00000846496.1	LINC02458-206	1042	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000846497.1	LINC02458-207	950	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000846494.1	LINC02458-204	862	No protein	-	lncRNA	-	-
ENST00000846500.1	LINC02458-210	848	No protein	-	lncRNA	-	-
ENST00000846501.1	LINC02458-211	844	No protein	-	lncRNA	-	-
ENST00000846504.1	LINC02458-214	685	No protein	-	lncRNA	-	-
ENST00000846502.1	LINC02458-212	506	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000846509.1	LINC02458-219	492	No protein	-	lncRNA	-	-
ENST00000846510.1	LINC02458-220	447	No protein	-	lncRNA	-	-
ENST00000846503.1	LINC02458-213	429	No protein	-	lncRNA	-	-
ENST00000846506.1	LINC02458-216	346	No protein	-	lncRNA	-	-
ENST00000846507.1	LINC02458-217	248	No protein	-	lncRNA	-	-

Summary

Statistics

Exons: 3, Coding exons: 0, Transcript length: 3,043 bps,

Transcript Support Level (TSL)

TSL:2

Version

ENST00000500381.3

Type

LncRNA

Annotation Method

Transcript which was created by the HAVANA-Ensembl manually supervised computational pipeline (TAGENE) for long-read sequence data.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENST00000500381.3 LINC02458-201

Summary

About Us

Get help

Our sister sites

Follow us

Favourite species

All species

Recent locations

Transcript: ENST00000500381.3 LINC02458-201

Summary

About Us

Get help

Our sister sites

Follow us